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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS06155 and HGI48_RS06160 are separated by 231 nucleotides
HGI48_RS06160 and HGI48_RS06165 are separated by 547 nucleotides
HGI48_RS06165 and HGI48_RS06170 are separated by 61 nucleotides
HGI48_RS06170 and HGI48_RS06175 are separated by 209 nucleotides
HGI48_RS06155: HGI48_RS06155 - ArsC family reductase, at 1,310,947 to 1,311,330
_RS06155
HGI48_RS06160: HGI48_RS06160 - protein YpfM, at 1,311,562 to 1,311,621
_RS06160
HGI48_RS06165: HGI48_RS06165 - transcription antiterminator/RNA stability regulator CspE, at 1,312,169 to 1,312,378
_RS06165
HGI48_RS06170: HGI48_RS06170 - fluoride efflux transporter CrcB, at 1,312,440 to 1,312,823
_RS06170
HGI48_RS06175: HGI48_RS06175 - deaminated glutathione amidase, at 1,313,033 to 1,313,821
_RS06175
Group
Condition
HGI48
_RS06155
HGI48
_RS06160
HGI48
_RS06165
HGI48
_RS06170
HGI48
_RS06175
carbon source
M9+polygalacturonate
-1.2
N.D.
N.D.
-0.4
-0.1
carbon source
M9+sucrose
-1.0
N.D.
N.D.
+0.1
-0.0
plant
Atlantic
-1.7
N.D.
N.D.
+0.4
+0.4
plant
Norland
-0.9
N.D.
N.D.
+0.1
+0.1
plant
Atlantic
+0.0
N.D.
N.D.
-0.3
-0.3
carbon source
M9+polygalacturonate
-0.1
N.D.
N.D.
+0.3
-0.6
carbon source
M9+glycerol
-0.1
N.D.
N.D.
-0.4
+0.0
plant
Upstate
-0.3
N.D.
N.D.
+0.2
-0.1
plant
Atlantic
+0.7
N.D.
N.D.
-0.5
-0.4
carbon source
M9+sucrose
-0.6
N.D.
N.D.
+0.5
-0.0
carbon source
M9+polygalacturonate
-0.4
N.D.
N.D.
+0.2
+0.3
control
PDB
+0.5
N.D.
N.D.
-0.1
-0.3
plant
Norland
+0.2
N.D.
N.D.
-0.2
+0.1
control
PDB
+0.4
N.D.
N.D.
-0.3
+0.0
carbon source
M9+glycerol
+0.3
N.D.
N.D.
-0.4
+0.2
plant
Atlantic
+1.2
N.D.
N.D.
-0.9
-0.1
control
LB
+0.3
N.D.
N.D.
-0.1
+0.0
control
LB
+0.5
N.D.
N.D.
-0.1
-0.2
plant
Norland
+0.6
N.D.
N.D.
-0.1
-0.2
carbon source
M9+sucrose
-0.3
N.D.
N.D.
+0.4
+0.3
plant
Upstate
+0.4
N.D.
N.D.
+0.0
-0.0
control
PDB
+0.7
N.D.
N.D.
-0.0
-0.3
plant
Norland
+0.6
N.D.
N.D.
+0.1
-0.1
plant
Norland
+0.5
N.D.
N.D.
-0.1
+0.1
carbon source
M9+glycerol
+0.6
N.D.
N.D.
+0.2
-0.2
carbon source
M9+glycerol
+1.1
N.D.
N.D.
-0.4
-0.1
carbon source
M9+glycerol
+0.6
N.D.
N.D.
-0.2
+0.2
plant
Upstate
+0.7
N.D.
N.D.
-0.1
+0.1
control
PDB
+0.8
N.D.
N.D.
+0.1
-0.0
plant
Atlantic
+0.7
N.D.
N.D.
+0.0
+0.1
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