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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS06075 and HGI48_RS06080 are separated by 180 nucleotides
HGI48_RS06080 and HGI48_RS06085 are separated by 141 nucleotides
HGI48_RS06085 and HGI48_RS06090 are separated by 9 nucleotides
HGI48_RS06090 and HGI48_RS06095 are separated by 14 nucleotides
HGI48_RS06075: HGI48_RS06075 - uracil phosphoribosyltransferase, at 1,296,000 to 1,296,626
_RS06075
HGI48_RS06080: HGI48_RS06080 - uracil permease, at 1,296,807 to 1,298,105
_RS06080
HGI48_RS06085: HGI48_RS06085 - DnaA inactivator Hda, at 1,298,247 to 1,298,954
_RS06085
HGI48_RS06090: HGI48_RS06090 - arsenate reductase (glutaredoxin), at 1,298,964 to 1,299,320
_RS06090
HGI48_RS06095: HGI48_RS06095 - M48 family metallopeptidase, at 1,299,335 to 1,300,798
_RS06095
Group
Condition
HGI48
_RS06075
HGI48
_RS06080
HGI48
_RS06085
HGI48
_RS06090
HGI48
_RS06095
plant
Atlantic
+0.5
+0.2
-1.2
-1.8
-0.9
control
PDB
-0.6
+0.1
-2.1
-0.7
+0.6
carbon source
M9+polygalacturonate
-0.6
+0.1
-0.9
-0.3
-0.8
carbon source
M9+glycerol
+0.0
-0.0
-1.6
+0.4
-0.4
plant
Upstate
+0.2
+0.0
-1.7
+0.4
-0.4
plant
Atlantic
+0.6
-0.0
-1.7
-0.2
-0.1
plant
Upstate
+0.2
+0.2
-1.1
-0.3
-0.1
plant
Upstate
-0.1
+0.1
-1.0
+0.1
-0.1
plant
Atlantic
+0.5
-0.2
-1.5
+0.7
-0.5
plant
Atlantic
+0.3
-0.0
-0.7
-0.1
-0.4
plant
Norland
+0.4
-0.2
+0.0
-1.0
-0.2
carbon source
M9+glycerol
-0.4
-0.1
-0.5
+0.3
-0.1
control
PDB
-0.5
+0.1
-0.6
-0.4
+0.6
carbon source
M9+glycerol
+0.6
-0.3
-1.3
+0.4
-0.3
carbon source
M9+sucrose
-0.5
-0.0
+0.4
-0.1
-0.4
control
PDB
-0.1
+0.4
-0.9
-0.5
+0.8
control
LB
+0.4
+0.1
-0.7
+0.1
-0.2
carbon source
M9+polygalacturonate
+0.1
+0.3
+0.4
-0.3
-0.8
plant
Norland
+0.3
+0.3
-0.8
+0.7
-0.6
plant
Upstate
+1.1
+0.1
-1.2
-0.2
+0.2
plant
Upstate
+0.4
+0.5
-1.3
+0.7
-0.3
control
PDB
-0.2
+0.3
-0.4
-0.3
+1.0
plant
Norland
+0.6
+0.5
-0.9
+0.5
-0.2
control
PDB
-0.5
+0.1
+0.1
+0.3
+0.6
control
PDB
+0.5
+0.1
-0.5
-0.3
+0.7
plant
Atlantic
+0.8
-0.0
+0.4
-0.3
-0.2
plant
Atlantic
-0.0
+0.3
-0.4
+1.3
-0.2
carbon source
M9+polygalacturonate
-0.1
+0.0
+1.3
-0.1
-0.2
carbon source
M9+sucrose
+0.4
+0.3
+0.7
-0.1
-0.2
carbon source
M9+sucrose
+0.1
+0.1
+1.6
-0.2
-0.2
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