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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS05960 and HGI48_RS05965 overlap by 1 nucleotides
HGI48_RS05965 and HGI48_RS05970 overlap by 17 nucleotides
HGI48_RS05970 and HGI48_RS05975 overlap by 1 nucleotides
HGI48_RS05975 and HGI48_RS05980 overlap by 13 nucleotides
HGI48_RS05960: HGI48_RS05960 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 1,268,043 to 1,269,719
_RS05960
HGI48_RS05965: HGI48_RS05965 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,269,719 to 1,270,510
_RS05965
HGI48_RS05970: HGI48_RS05970 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 1,270,494 to 1,271,351
_RS05970
HGI48_RS05975: HGI48_RS05975 - o-succinylbenzoate synthase, at 1,271,351 to 1,272,319
_RS05975
HGI48_RS05980: HGI48_RS05980 - o-succinylbenzoate--CoA ligase, at 1,272,307 to 1,273,677
_RS05980
Group
Condition
HGI48
_RS05960
HGI48
_RS05965
HGI48
_RS05970
HGI48
_RS05975
HGI48
_RS05980
plant
Norland
-0.1
-0.2
-0.5
-0.2
-0.1
plant
Upstate
+0.0
-0.2
-0.4
-0.1
-0.3
carbon source
M9+glycerol
+0.2
-0.4
-0.0
-0.3
-0.3
plant
Atlantic
-0.1
-0.4
-0.7
+0.2
+0.2
control
LB
-0.2
-0.3
-0.1
+0.1
-0.1
carbon source
M9+glycerol
+0.3
-0.3
-0.0
-0.0
-0.5
plant
Atlantic
+0.0
+0.1
-0.3
-0.1
-0.2
carbon source
M9+glycerol
+0.1
-0.3
-0.3
+0.1
-0.1
control
LB
+0.2
-0.3
-0.0
+0.1
-0.4
plant
Norland
+0.2
-0.3
-0.0
+0.0
-0.3
plant
Upstate
+0.2
+0.0
+0.2
-0.2
-0.5
plant
Atlantic
+0.5
-0.5
+0.3
+0.1
-0.6
plant
Upstate
-0.0
-0.4
+0.4
+0.1
-0.2
carbon source
M9+glycerol
+0.2
-0.5
+0.3
+0.2
-0.1
carbon source
M9+polygalacturonate
+0.4
-0.2
-0.3
+0.3
+0.1
carbon source
M9+glycerol
+0.5
-0.2
-0.0
+0.2
+0.0
carbon source
M9+sucrose
-0.0
+0.2
+0.4
+0.1
-0.1
plant
Atlantic
-0.5
+0.5
+0.2
+0.5
-0.1
carbon source
M9+sucrose
+0.1
+0.2
-0.2
+0.4
+0.1
carbon source
M9+glycerol
+0.3
-0.1
+0.4
+0.0
-0.0
carbon source
M9+sucrose
-0.0
+0.3
+0.0
+0.0
+0.4
control
PDB
+0.4
-0.0
-0.1
+0.5
-0.0
control
PDB
+0.3
+0.3
+0.0
+0.2
+0.0
control
PDB
+0.4
+0.3
-0.1
+0.3
+0.0
control
PDB
+0.2
-0.0
+0.5
+0.4
-0.2
plant
Atlantic
-0.3
-0.3
+0.7
+0.5
+0.3
carbon source
M9+polygalacturonate
+0.0
+0.3
-0.0
+0.3
+0.4
control
PDB
+0.2
+0.1
+0.4
+0.4
-0.1
control
PDB
+0.3
+0.2
+0.4
+0.3
-0.1
carbon source
M9+polygalacturonate
+0.3
-0.0
+0.7
+0.6
+0.4
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