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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS05725 and HGI48_RS05730 are separated by 77 nucleotides
HGI48_RS05730 and HGI48_RS05735 overlap by 8 nucleotides
HGI48_RS05735 and HGI48_RS05740 are separated by 294 nucleotides
HGI48_RS05740 and HGI48_RS05745 are separated by 42 nucleotides
HGI48_RS05725: HGI48_RS05725 - Lrp/AsnC ligand binding domain-containing protein, at 1,207,919 to 1,208,380
_RS05725
HGI48_RS05730: HGI48_RS05730 - SmdA family multidrug ABC transporter permease/ATP-binding protein, at 1,208,458 to 1,210,224
_RS05730
HGI48_RS05735: HGI48_RS05735 - SmdB family multidrug efflux ABC transporter permease/ATP-binding protein, at 1,210,217 to 1,212,010
_RS05735
HGI48_RS05740: HGI48_RS05740 - P-II family nitrogen regulator, at 1,212,305 to 1,212,643
_RS05740
HGI48_RS05745: HGI48_RS05745 - ammonium transporter AmtB, at 1,212,686 to 1,213,978
_RS05745
Group
Condition
HGI48
_RS05725
HGI48
_RS05730
HGI48
_RS05735
HGI48
_RS05740
HGI48
_RS05745
control
PDB
-0.2
-1.3
-1.3
-0.7
-0.4
control
PDB
+0.3
-1.7
-1.0
-0.5
-0.4
control
PDB
+0.0
-1.6
-1.3
-0.3
-0.3
control
PDB
-0.2
-1.7
-1.4
-0.0
+0.0
control
PDB
+0.0
-1.4
-1.3
-0.3
+0.0
control
PDB
+0.1
-1.4
-1.2
-0.2
-0.1
carbon source
M9+sucrose
-0.4
-1.5
-0.8
+0.3
+0.0
carbon source
M9+sucrose
-0.2
-1.1
-1.1
-0.1
+0.2
carbon source
M9+sucrose
-0.3
-1.2
-1.3
+0.7
-0.0
plant
Atlantic
+0.1
-0.8
-0.6
-0.6
-0.0
plant
Atlantic
+0.0
-0.4
-0.7
-0.4
-0.4
plant
Upstate
+0.0
-0.5
-0.6
-0.6
-0.2
plant
Atlantic
+0.3
-0.3
-0.2
-1.1
-0.2
plant
Upstate
+0.1
-0.4
-0.3
-0.9
+0.0
plant
Atlantic
+0.1
-0.5
-0.4
-0.5
-0.1
carbon source
M9+polygalacturonate
-0.5
-0.6
-0.5
-0.2
+0.4
carbon source
M9+polygalacturonate
-0.2
-0.5
-0.5
+0.2
+0.0
control
LB
+0.2
-0.4
-0.3
-0.4
-0.1
plant
Upstate
+0.3
-0.5
-0.6
+0.1
-0.2
plant
Norland
+0.3
-0.2
-0.3
-0.5
-0.0
plant
Norland
+0.3
-0.4
-0.6
+0.0
+0.0
carbon source
M9+polygalacturonate
-0.2
-0.7
-0.4
+0.4
+0.5
plant
Upstate
+0.2
-0.6
-0.3
+0.5
-0.1
plant
Norland
+0.3
-0.5
-0.2
+0.3
-0.0
carbon source
M9+glycerol
+0.1
-0.4
-0.3
+1.8
-0.0
carbon source
M9+glycerol
+0.3
-0.1
-0.3
+1.5
-0.3
carbon source
M9+glycerol
+0.4
-0.2
-0.2
+1.4
-0.1
carbon source
M9+glycerol
+0.2
-0.3
-0.6
+2.1
-0.1
carbon source
M9+glycerol
-0.0
-0.2
-0.4
+2.1
-0.1
carbon source
M9+glycerol
+0.1
-0.5
-0.4
+2.4
+0.0
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