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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS05710 and HGI48_RS05715 are separated by 112 nucleotides
HGI48_RS05715 and HGI48_RS05720 are separated by 126 nucleotides
HGI48_RS05720 and HGI48_RS05725 are separated by 177 nucleotides
HGI48_RS05725 and HGI48_RS05730 are separated by 77 nucleotides
HGI48_RS05710: HGI48_RS05710 - helix-hairpin-helix domain-containing protein, at 1,205,380 to 1,205,754
_RS05710
HGI48_RS05715: HGI48_RS05715 - 7-cyano-7-deazaguanine synthase QueC, at 1,205,867 to 1,206,562
_RS05715
HGI48_RS05720: HGI48_RS05720 - PLP-dependent cysteine synthase family protein, at 1,206,689 to 1,207,741
_RS05720
HGI48_RS05725: HGI48_RS05725 - Lrp/AsnC ligand binding domain-containing protein, at 1,207,919 to 1,208,380
_RS05725
HGI48_RS05730: HGI48_RS05730 - SmdA family multidrug ABC transporter permease/ATP-binding protein, at 1,208,458 to 1,210,224
_RS05730
Group
Condition
HGI48
_RS05710
HGI48
_RS05715
HGI48
_RS05720
HGI48
_RS05725
HGI48
_RS05730
carbon source
M9+sucrose
-0.7
-0.4
-0.5
-0.4
-1.5
carbon source
M9+sucrose
-0.1
-0.1
-0.2
-0.3
-1.2
control
PDB
-0.2
+0.5
+0.0
-0.2
-1.7
control
PDB
-0.1
+0.3
-0.2
+0.3
-1.7
control
PDB
-0.1
+0.4
-0.2
+0.0
-1.6
plant
Atlantic
+0.3
-1.0
+0.2
+0.1
-0.8
carbon source
M9+sucrose
+0.3
+0.3
-0.4
-0.2
-1.1
carbon source
M9+polygalacturonate
+0.2
-0.2
-0.1
-0.5
-0.6
control
PDB
+0.2
+0.5
-0.2
-0.2
-1.3
control
PDB
-0.1
+0.6
+0.2
+0.0
-1.4
plant
Norland
-0.4
-0.1
-0.0
+0.3
-0.4
plant
Norland
-0.3
-0.2
+0.2
+0.1
-0.4
control
PDB
+0.3
+0.4
+0.1
+0.1
-1.4
plant
Norland
-0.2
-0.3
+0.4
+0.3
-0.5
plant
Upstate
-0.1
-0.1
+0.1
+0.3
-0.5
plant
Atlantic
+0.4
-0.4
+0.1
+0.0
-0.4
carbon source
M9+polygalacturonate
+0.8
-0.0
-0.0
-0.2
-0.7
carbon source
M9+glycerol
-0.2
+0.1
+0.2
+0.2
-0.3
plant
Upstate
-0.1
+0.3
+0.2
+0.1
-0.4
plant
Upstate
+0.0
-0.3
+0.7
-0.0
-0.3
carbon source
M9+polygalacturonate
+0.2
+0.3
+0.2
-0.2
-0.5
plant
Upstate
+0.4
+0.2
+0.1
+0.0
-0.5
plant
Upstate
+0.2
+0.2
+0.2
+0.2
-0.6
plant
Atlantic
+0.4
-0.4
+0.2
+0.3
-0.3
control
LB
+0.2
+0.0
+0.2
+0.2
-0.4
carbon source
M9+glycerol
+0.3
+0.0
+0.3
+0.1
-0.5
carbon source
M9+glycerol
+0.5
+0.2
+0.3
+0.1
-0.4
carbon source
M9+glycerol
+0.5
-0.2
+0.0
+0.3
-0.1
plant
Atlantic
+0.4
+0.6
+0.4
-0.0
+0.1
carbon source
M9+glycerol
+0.9
+0.4
+0.3
+0.4
-0.2
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