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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS05680 and HGI48_RS05685 are separated by 434 nucleotides
HGI48_RS05685 and HGI48_RS05690 are separated by 126 nucleotides
HGI48_RS05690 and HGI48_RS05695 are separated by 188 nucleotides
HGI48_RS05695 and HGI48_RS05700 are separated by 194 nucleotides
HGI48_RS05680: HGI48_RS05680 - trigger factor, at 1,196,323 to 1,197,627
_RS05680
HGI48_RS05685: HGI48_RS05685 - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 1,198,062 to 1,198,685
_RS05685
HGI48_RS05690: HGI48_RS05690 - ATP-dependent protease ATP-binding subunit ClpX, at 1,198,812 to 1,200,086
_RS05690
HGI48_RS05695: HGI48_RS05695 - endopeptidase La, at 1,200,275 to 1,202,638
_RS05695
HGI48_RS05700: HGI48_RS05700 - DNA-binding protein HU-beta, at 1,202,833 to 1,203,105
_RS05700
Group
Condition
HGI48
_RS05680
HGI48
_RS05685
HGI48
_RS05690
HGI48
_RS05695
HGI48
_RS05700
plant
Atlantic
-1.0
N.D.
-2.3
-1.0
-4.3
plant
Atlantic
-0.5
N.D.
-0.2
-0.1
-3.6
plant
Upstate
-0.7
N.D.
-0.7
-0.6
-1.2
plant
Atlantic
-0.9
N.D.
-0.4
-0.3
-1.5
plant
Atlantic
-0.8
N.D.
-1.0
-1.1
-0.2
plant
Upstate
-0.7
N.D.
-0.9
-0.4
-1.0
carbon source
M9+sucrose
-0.7
N.D.
-1.1
-0.6
-0.3
carbon source
M9+polygalacturonate
+0.6
N.D.
-0.4
-0.9
-1.5
plant
Norland
-0.5
N.D.
-0.5
-0.8
-0.3
carbon source
M9+sucrose
-0.4
N.D.
-1.0
-1.0
+0.5
plant
Upstate
-0.4
N.D.
-0.2
-0.7
-0.5
carbon source
M9+polygalacturonate
+0.7
N.D.
-1.9
-0.8
+0.6
plant
Norland
-0.4
N.D.
+0.5
-0.2
-1.3
control
LB
-0.2
N.D.
+0.1
-0.3
-0.9
plant
Upstate
-0.5
N.D.
+0.2
-0.4
-0.5
carbon source
M9+sucrose
-0.3
N.D.
-0.5
-1.1
+0.7
carbon source
M9+glycerol
-0.6
N.D.
+0.4
+0.6
-1.1
plant
Upstate
+0.3
N.D.
+0.5
-1.0
-0.1
carbon source
M9+polygalacturonate
+0.3
N.D.
-0.5
-0.8
+1.5
control
PDB
-0.1
N.D.
-0.1
+1.2
-0.4
carbon source
M9+glycerol
+0.5
N.D.
+0.3
+1.0
-1.1
carbon source
M9+glycerol
-0.2
N.D.
+0.4
+1.7
-1.2
control
PDB
-0.2
N.D.
+0.2
+1.5
-0.3
control
PDB
-0.3
N.D.
+0.8
+1.4
-0.7
carbon source
M9+glycerol
-0.3
N.D.
+0.1
+1.6
+0.1
carbon source
M9+glycerol
-0.7
N.D.
+0.3
+1.7
+0.4
carbon source
M9+glycerol
+0.1
N.D.
+0.1
+1.6
-0.0
control
PDB
-0.0
N.D.
+0.8
+1.5
-0.5
control
PDB
-0.1
N.D.
+0.9
+1.1
+0.4
control
PDB
-0.0
N.D.
+1.0
+1.6
+1.0
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