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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS05650 and HGI48_RS05655 overlap by 11 nucleotides
HGI48_RS05655 and HGI48_RS05660 are separated by 19 nucleotides
HGI48_RS05660 and HGI48_RS05665 are separated by 433 nucleotides
HGI48_RS05665 and HGI48_RS05670 are separated by 57 nucleotides
HGI48_RS05650: HGI48_RS05650 - cytochrome o ubiquinol oxidase subunit III, at 1,189,209 to 1,189,823
_RS05650
HGI48_RS05655: HGI48_RS05655 - cytochrome o ubiquinol oxidase subunit I, at 1,189,813 to 1,191,804
_RS05655
HGI48_RS05660: HGI48_RS05660 - cytochrome o ubiquinol oxidase subunit II, at 1,191,824 to 1,192,774
_RS05660
HGI48_RS05665: HGI48_RS05665 - muropeptide MFS transporter AmpG, at 1,193,208 to 1,194,677
_RS05665
HGI48_RS05670: HGI48_RS05670 - hypothetical protein, at 1,194,735 to 1,195,313
_RS05670
Group
Condition
HGI48
_RS05650
HGI48
_RS05655
HGI48
_RS05660
HGI48
_RS05665
HGI48
_RS05670
carbon source
M9+sucrose
-3.2
-1.3
-1.6
+0.3
-0.1
carbon source
M9+polygalacturonate
-3.0
-1.1
-0.6
-0.0
-0.3
carbon source
M9+polygalacturonate
-2.4
-1.6
-0.9
+0.0
-0.3
carbon source
M9+sucrose
-1.3
-1.3
-1.9
+0.2
+0.0
carbon source
M9+polygalacturonate
-1.1
-1.3
-1.3
-0.1
-0.1
plant
Norland
-1.3
-0.7
-1.3
-0.1
-0.1
plant
Atlantic
-1.4
-0.7
-1.1
-0.1
+0.0
plant
Atlantic
-1.1
-0.6
-0.8
-0.6
-0.0
plant
Atlantic
-1.5
-0.4
-0.5
-0.5
+0.3
plant
Norland
-0.7
-0.6
-1.2
-0.2
+0.3
plant
Upstate
-0.8
-0.9
-0.4
+0.0
-0.3
carbon source
M9+glycerol
-1.3
-0.6
-0.6
+0.1
-0.1
plant
Atlantic
-1.8
-0.2
+0.2
-0.3
-0.0
plant
Upstate
-0.9
-0.7
-0.6
-0.1
+0.1
plant
Upstate
-0.6
-0.8
-0.4
-0.1
-0.2
carbon source
M9+sucrose
-1.0
-0.8
-0.5
+0.3
+0.1
carbon source
M9+glycerol
+0.2
-0.1
-1.2
-0.4
-0.3
plant
Norland
-0.2
-0.7
-0.6
-0.1
-0.0
plant
Upstate
-0.6
-1.0
+0.0
-0.1
+0.1
plant
Atlantic
-0.0
-0.9
-0.6
-0.0
+0.2
carbon source
M9+glycerol
+0.5
-0.2
-1.4
-0.2
+0.2
plant
Upstate
-0.8
-0.4
-0.1
-0.2
+0.3
control
LB
-0.4
-0.6
+0.1
+0.0
-0.1
control
LB
-0.3
-0.7
+0.2
-0.0
-0.1
plant
Norland
-0.2
-0.5
-0.4
+0.0
+0.3
plant
Norland
-0.8
-0.3
-0.2
+0.1
+0.4
control
LB
-0.1
-0.4
-0.4
+0.0
+0.2
plant
Norland
-0.3
-1.0
+0.2
+0.1
+0.4
control
PDB
+0.3
+0.0
+0.4
-0.0
+0.2
carbon source
M9+glycerol
+0.7
+0.3
+0.0
-0.2
+0.1
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