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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS05485 and HGI48_RS05490 are separated by 27 nucleotides
HGI48_RS05490 and HGI48_RS05495 are separated by 80 nucleotides
HGI48_RS05495 and HGI48_RS05500 are separated by 268 nucleotides
HGI48_RS05500 and HGI48_RS05505 are separated by 469 nucleotides
HGI48_RS05485: HGI48_RS05485 - phosphate response regulator transcription factor PhoB, at 1,153,998 to 1,154,687
_RS05485
HGI48_RS05490: HGI48_RS05490 - phosphate regulon sensor histidine kinase PhoR, at 1,154,715 to 1,156,037
_RS05490
HGI48_RS05495: HGI48_RS05495 - phosphate ABC transporter substrate-binding protein, at 1,156,118 to 1,157,095
_RS05495
HGI48_RS05500: HGI48_RS05500 - cobalamin-independent methionine synthase II family protein, at 1,157,364 to 1,158,470
_RS05500
HGI48_RS05505: HGI48_RS05505 - branched-chain amino acid transport system II carrier protein, at 1,158,940 to 1,160,259
_RS05505
Group
Condition
HGI48
_RS05485
HGI48
_RS05490
HGI48
_RS05495
HGI48
_RS05500
HGI48
_RS05505
carbon source
M9+polygalacturonate
-0.2
+0.1
-1.0
+0.1
+0.2
control
PDB
-0.2
-0.2
-0.2
-0.0
+0.1
plant
Upstate
-0.3
-0.2
+0.3
-0.2
-0.1
carbon source
M9+sucrose
+0.2
+0.1
-0.4
-0.6
+0.3
plant
Norland
-0.2
-0.0
-0.2
+0.1
-0.1
carbon source
M9+glycerol
-0.4
-0.1
+0.1
-0.1
+0.2
control
PDB
-0.1
-0.2
-0.0
-0.3
+0.3
plant
Atlantic
-0.4
-0.1
+0.3
+0.1
-0.2
plant
Atlantic
-0.2
-0.0
+0.4
-0.5
+0.1
control
LB
+0.0
-0.0
-0.1
+0.3
-0.3
carbon source
M9+polygalacturonate
-0.0
+0.3
-0.7
+0.1
+0.3
carbon source
M9+polygalacturonate
+0.1
+0.2
-0.5
-0.3
+0.4
carbon source
M9+sucrose
+0.4
+0.0
-0.3
-0.4
+0.2
plant
Upstate
-0.2
-0.0
+0.2
-0.1
+0.1
plant
Atlantic
-0.5
-0.0
+0.7
-0.3
+0.1
plant
Atlantic
+0.2
-0.3
-0.4
+0.5
+0.0
carbon source
M9+glycerol
-0.1
-0.0
+0.0
-0.2
+0.3
carbon source
M9+sucrose
+0.3
+0.2
-0.3
-0.2
+0.1
carbon source
M9+glycerol
+0.0
-0.2
+0.1
+0.2
+0.0
carbon source
M9+glycerol
-0.1
-0.1
+0.4
-0.2
+0.2
plant
Norland
-0.1
-0.1
+0.5
-0.0
-0.1
plant
Upstate
-0.1
-0.1
+0.3
+0.1
-0.0
control
PDB
-0.1
+0.2
+0.1
+0.1
+0.0
plant
Upstate
-0.1
-0.1
+0.2
+0.4
-0.0
control
PDB
+0.1
-0.2
+0.1
+0.1
+0.3
carbon source
M9+glycerol
-0.1
+0.0
+0.2
+0.0
+0.3
plant
Atlantic
-0.1
-0.1
+0.6
-0.2
+0.4
plant
Atlantic
-0.0
+0.3
+0.2
+0.1
+0.1
plant
Norland
+0.1
-0.1
+0.4
+0.2
+0.1
control
PDB
-0.1
+0.1
+0.4
+0.4
+0.1
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