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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS05405 and HGI48_RS05410 are separated by 27 nucleotides
HGI48_RS05410 and HGI48_RS05415 are separated by 444 nucleotides
HGI48_RS05415 and HGI48_RS05420 are separated by 435 nucleotides
HGI48_RS05420 and HGI48_RS05425 are separated by 359 nucleotides
HGI48_RS05405: HGI48_RS05405 - hypothetical protein, at 1,133,328 to 1,133,879
_RS05405
HGI48_RS05410: HGI48_RS05410 - SpoIIE family protein phosphatase, at 1,133,907 to 1,135,142
_RS05410
HGI48_RS05415: HGI48_RS05415 - hypothetical protein, at 1,135,587 to 1,136,183
_RS05415
HGI48_RS05420: HGI48_RS05420 - N-acetyltransferase, at 1,136,619 to 1,137,149
_RS05420
HGI48_RS05425: HGI48_RS05425 - M20 peptidase family dipeptidase, at 1,137,509 to 1,137,712
_RS05425
Group
Condition
HGI48
_RS05405
HGI48
_RS05410
HGI48
_RS05415
HGI48
_RS05420
HGI48
_RS05425
plant
Norland
-0.4
-0.1
-0.3
-0.7
N.D.
plant
Norland
-0.1
-0.0
-0.2
-0.4
N.D.
plant
Upstate
-0.1
+0.2
+0.0
-0.8
N.D.
plant
Norland
+0.0
-0.1
-0.0
-0.5
N.D.
control
PDB
-0.2
+0.1
-0.4
-0.1
N.D.
plant
Atlantic
+0.0
-0.2
-0.1
-0.2
N.D.
carbon source
M9+glycerol
+0.2
+0.0
-0.3
-0.4
N.D.
control
LB
-0.3
+0.2
+0.1
-0.3
N.D.
plant
Atlantic
+0.4
-0.0
+0.0
-0.6
N.D.
plant
Atlantic
-0.0
+0.2
-0.2
-0.1
N.D.
plant
Norland
-0.1
+0.2
-0.0
-0.2
N.D.
carbon source
M9+glycerol
+0.4
+0.1
-0.3
-0.3
N.D.
control
PDB
+0.3
+0.2
-0.4
-0.1
N.D.
carbon source
M9+glycerol
+0.3
-0.1
-0.1
-0.1
N.D.
carbon source
M9+glycerol
+0.7
-0.1
-0.6
+0.1
N.D.
control
PDB
+0.4
+0.1
-0.2
-0.1
N.D.
plant
Upstate
-0.1
+0.0
+0.0
+0.3
N.D.
control
PDB
+0.5
+0.0
-0.4
+0.0
N.D.
carbon source
M9+sucrose
+0.2
-0.1
-0.1
+0.1
N.D.
plant
Norland
+0.4
-0.0
+0.2
-0.2
N.D.
plant
Atlantic
+0.5
+0.1
-0.2
-0.1
N.D.
carbon source
M9+sucrose
+0.2
+0.1
-0.0
+0.2
N.D.
plant
Norland
+0.6
-0.0
-0.0
-0.2
N.D.
plant
Atlantic
+0.1
+0.1
-0.1
+0.3
N.D.
carbon source
M9+glycerol
+0.5
+0.0
-0.2
+0.2
N.D.
carbon source
M9+polygalacturonate
+0.4
+0.0
-0.0
+0.1
N.D.
carbon source
M9+polygalacturonate
+0.5
-0.3
+0.1
+0.5
N.D.
carbon source
M9+polygalacturonate
+0.9
-0.1
-0.0
+0.3
N.D.
plant
Upstate
+1.2
+0.3
-0.2
-0.2
N.D.
carbon source
M9+glycerol
+1.2
+0.0
+0.0
+0.1
N.D.
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