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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS05390 and HGI48_RS05395 are separated by 114 nucleotides
HGI48_RS05395 and HGI48_RS05400 are separated by 4 nucleotides
HGI48_RS05400 and HGI48_RS05405 are separated by 2 nucleotides
HGI48_RS05405 and HGI48_RS05410 are separated by 27 nucleotides
HGI48_RS05390: HGI48_RS05390 - alkylphosphonate utilization protein, at 1,131,720 to 1,132,061
_RS05390
HGI48_RS05395: HGI48_RS05395 - GGDEF domain-containing protein, at 1,132,176 to 1,132,901
_RS05395
HGI48_RS05400: HGI48_RS05400 - DUF1987 domain-containing protein, at 1,132,906 to 1,133,325
_RS05400
HGI48_RS05405: HGI48_RS05405 - hypothetical protein, at 1,133,328 to 1,133,879
_RS05405
HGI48_RS05410: HGI48_RS05410 - SpoIIE family protein phosphatase, at 1,133,907 to 1,135,142
_RS05410
Group
Condition
HGI48
_RS05390
HGI48
_RS05395
HGI48
_RS05400
HGI48
_RS05405
HGI48
_RS05410
plant
Atlantic
-4.0
+0.0
+0.3
+0.1
+0.1
plant
Atlantic
-1.6
-0.5
+0.2
-0.0
+0.2
plant
Upstate
-1.3
-0.3
-0.1
+0.2
-0.1
plant
Norland
-0.7
-0.1
-0.3
-0.4
-0.1
plant
Atlantic
-1.4
+0.3
-0.3
+0.4
-0.0
plant
Upstate
-0.5
-0.0
-0.2
-0.1
+0.0
plant
Upstate
-0.1
-0.4
-0.3
-0.1
+0.2
control
LB
-0.5
-0.2
+0.2
-0.3
+0.2
carbon source
M9+glycerol
-1.3
-0.0
+0.3
+0.4
+0.1
carbon source
M9+glycerol
-0.9
+0.1
-0.1
+0.5
+0.0
carbon source
M9+sucrose
-0.3
-0.3
+0.2
+0.1
-0.1
carbon source
M9+polygalacturonate
-0.6
+0.3
-0.5
+0.4
+0.0
plant
Atlantic
-0.3
-0.2
-0.2
+0.5
+0.1
carbon source
M9+glycerol
+0.3
-0.3
-0.4
+0.3
-0.1
control
PDB
-0.4
+0.0
+0.2
+0.1
-0.1
carbon source
M9+polygalacturonate
-0.3
+0.2
-0.3
+0.5
-0.3
control
PDB
-0.3
+0.0
-0.2
+0.4
+0.1
carbon source
M9+glycerol
-0.1
-0.2
-0.4
+0.7
-0.1
plant
Atlantic
-0.3
+0.1
+0.4
+0.0
-0.2
carbon source
M9+glycerol
+0.4
-0.2
-0.2
+0.2
+0.0
carbon source
M9+sucrose
-0.4
+0.2
+0.2
+0.2
-0.1
control
PDB
-0.6
+0.3
-0.1
+0.5
+0.0
control
PDB
-0.2
+0.3
-0.1
+0.3
+0.2
carbon source
M9+glycerol
+0.4
-0.5
-0.3
+1.2
+0.0
plant
Norland
+0.3
-0.2
+0.1
+0.6
-0.0
plant
Norland
+0.8
+0.1
+0.1
+0.0
-0.1
plant
Upstate
+0.7
+0.1
+0.3
-0.0
+0.1
control
LB
+0.8
+0.1
+0.1
+0.1
+0.1
plant
Upstate
-0.2
+0.3
-0.4
+1.2
+0.3
carbon source
M9+polygalacturonate
+0.5
+0.1
-0.1
+0.9
-0.1
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