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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS05180 and HGI48_RS05185 overlap by 4 nucleotides
HGI48_RS05185 and HGI48_RS05190 are separated by 75 nucleotides
HGI48_RS05190 and HGI48_RS05195 are separated by 12 nucleotides
HGI48_RS05195 and HGI48_RS05200 are separated by 204 nucleotides
HGI48_RS05180: HGI48_RS05180 - lipid-A-disaccharide synthase, at 1,085,793 to 1,086,941
_RS05180
HGI48_RS05185: HGI48_RS05185 - ribonuclease HII, at 1,086,938 to 1,087,534
_RS05185
HGI48_RS05190: HGI48_RS05190 - DNA polymerase III subunit alpha, at 1,087,610 to 1,091,092
_RS05190
HGI48_RS05195: HGI48_RS05195 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 1,091,105 to 1,092,064
_RS05195
HGI48_RS05200: HGI48_RS05200 - VOC family protein, at 1,092,269 to 1,092,658
_RS05200
Group
Condition
HGI48
_RS05180
HGI48
_RS05185
HGI48
_RS05190
HGI48
_RS05195
HGI48
_RS05200
plant
Atlantic
N.D.
N.D.
N.D.
N.D.
-1.3
carbon source
M9+glycerol
N.D.
N.D.
N.D.
N.D.
-1.1
plant
Atlantic
N.D.
N.D.
N.D.
N.D.
-1.0
control
PDB
N.D.
N.D.
N.D.
N.D.
-0.9
control
PDB
N.D.
N.D.
N.D.
N.D.
-0.7
plant
Upstate
N.D.
N.D.
N.D.
N.D.
-0.7
plant
Upstate
N.D.
N.D.
N.D.
N.D.
-0.7
carbon source
M9+glycerol
N.D.
N.D.
N.D.
N.D.
-0.7
plant
Upstate
N.D.
N.D.
N.D.
N.D.
-0.6
control
PDB
N.D.
N.D.
N.D.
N.D.
-0.5
control
PDB
N.D.
N.D.
N.D.
N.D.
-0.5
plant
Norland
N.D.
N.D.
N.D.
N.D.
-0.5
plant
Upstate
N.D.
N.D.
N.D.
N.D.
-0.4
plant
Atlantic
N.D.
N.D.
N.D.
N.D.
-0.4
plant
Norland
N.D.
N.D.
N.D.
N.D.
-0.3
control
LB
N.D.
N.D.
N.D.
N.D.
-0.3
plant
Norland
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
M9+glycerol
N.D.
N.D.
N.D.
N.D.
-0.3
plant
Norland
N.D.
N.D.
N.D.
N.D.
-0.2
plant
Atlantic
N.D.
N.D.
N.D.
N.D.
-0.2
plant
Norland
N.D.
N.D.
N.D.
N.D.
-0.2
control
LB
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
M9+sucrose
N.D.
N.D.
N.D.
N.D.
-0.1
carbon source
M9+polygalacturonate
N.D.
N.D.
N.D.
N.D.
+0.2
control
LB
N.D.
N.D.
N.D.
N.D.
+0.2
control
PDB
N.D.
N.D.
N.D.
N.D.
+0.3
plant
Atlantic
N.D.
N.D.
N.D.
N.D.
+0.5
carbon source
M9+glycerol
N.D.
N.D.
N.D.
N.D.
+0.5
carbon source
M9+sucrose
N.D.
N.D.
N.D.
N.D.
+0.6
carbon source
M9+sucrose
N.D.
N.D.
N.D.
N.D.
+0.7
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