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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS05035 and HGI48_RS05040 overlap by 13 nucleotides
HGI48_RS05040 and HGI48_RS05045 are separated by 3 nucleotides
HGI48_RS05045 and HGI48_RS05050 are separated by 485 nucleotides
HGI48_RS05050 and HGI48_RS05055 are separated by 150 nucleotides
HGI48_RS05035: HGI48_RS05035 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 1,055,974 to 1,056,807
_RS05035
HGI48_RS05040: HGI48_RS05040 - cysteine desulfurase sulfur acceptor subunit CsdE, at 1,056,795 to 1,057,238
_RS05040
HGI48_RS05045: HGI48_RS05045 - cysteine desulfurase CsdA, at 1,057,242 to 1,058,447
_RS05045
HGI48_RS05050: HGI48_RS05050 - transcriptional regulator GcvA, at 1,058,933 to 1,059,859
_RS05050
HGI48_RS05055: HGI48_RS05055 - DUF423 domain-containing protein, at 1,060,010 to 1,060,396
_RS05055
Group
Condition
HGI48
_RS05035
HGI48
_RS05040
HGI48
_RS05045
HGI48
_RS05050
HGI48
_RS05055
control
LB
-0.8
N.D.
-0.1
+0.0
-0.1
control
LB
-0.4
N.D.
-0.2
-0.2
-0.1
plant
Atlantic
-0.4
N.D.
+0.1
-0.5
-0.0
plant
Upstate
-0.2
N.D.
-0.3
-0.1
-0.2
plant
Atlantic
-0.3
N.D.
-0.4
-0.1
+0.0
plant
Atlantic
-0.3
N.D.
-0.1
-0.0
-0.2
plant
Upstate
-0.2
N.D.
-0.3
-0.0
-0.1
plant
Upstate
-0.7
N.D.
-0.1
+0.2
+0.0
plant
Upstate
+0.0
N.D.
-0.1
-0.5
-0.0
plant
Norland
-0.4
N.D.
-0.2
-0.0
+0.2
control
LB
-0.4
N.D.
+0.0
+0.1
-0.1
plant
Atlantic
-0.1
N.D.
-0.3
+0.1
-0.1
carbon source
M9+glycerol
-0.3
N.D.
-0.1
+0.3
-0.2
plant
Norland
-0.4
N.D.
-0.0
+0.2
-0.1
plant
Norland
-0.0
N.D.
+0.1
-0.2
-0.1
carbon source
M9+glycerol
-0.3
N.D.
-0.2
+0.3
-0.1
carbon source
M9+glycerol
+0.1
N.D.
-0.3
-0.1
+0.1
control
PDB
-0.3
N.D.
+0.3
-0.3
+0.2
carbon source
M9+polygalacturonate
-0.0
N.D.
+0.5
-0.5
-0.0
control
PDB
-0.0
N.D.
+0.1
-0.4
+0.3
control
LB
-0.0
N.D.
-0.3
+0.2
+0.1
plant
Atlantic
-0.4
N.D.
-0.1
+0.7
+0.1
carbon source
M9+glycerol
+0.2
N.D.
-0.1
+0.2
+0.1
plant
Atlantic
-0.2
N.D.
-0.0
+0.4
+0.4
plant
Upstate
+0.2
N.D.
-0.1
+0.1
+0.2
carbon source
M9+polygalacturonate
+0.5
N.D.
+0.5
-0.4
-0.1
carbon source
M9+polygalacturonate
+0.6
N.D.
+0.4
-0.4
+0.0
carbon source
M9+sucrose
+0.8
N.D.
+1.0
+0.8
+0.1
carbon source
M9+sucrose
+0.8
N.D.
+1.1
+0.9
+0.1
carbon source
M9+sucrose
+1.2
N.D.
+1.3
+1.0
+0.0
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