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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04995 and HGI48_RS05000 are separated by 191 nucleotides
HGI48_RS05000 and HGI48_RS05005 are separated by 206 nucleotides
HGI48_RS05005 and HGI48_RS05010 are separated by 81 nucleotides
HGI48_RS05010 and HGI48_RS05015 are separated by 38 nucleotides
HGI48_RS04995: HGI48_RS04995 - pitrilysin, at 1,046,705 to 1,049,602
_RS04995
HGI48_RS05000: HGI48_RS05000 - amino-acid N-acetyltransferase, at 1,049,794 to 1,051,137
_RS05000
HGI48_RS05005: HGI48_RS05005 - N-acetylmuramoyl-L-alanine amidase, at 1,051,344 to 1,052,582
_RS05005
HGI48_RS05010: HGI48_RS05010 - tRNA-Met, at 1,052,664 to 1,052,740
_RS05010
HGI48_RS05015: HGI48_RS05015 - tRNA-Met, at 1,052,779 to 1,052,855
_RS05015
Group
Condition
HGI48
_RS04995
HGI48
_RS05000
HGI48
_RS05005
HGI48
_RS05010
HGI48
_RS05015
carbon source
M9+sucrose
+0.0
-1.8
-0.1
N.D.
N.D.
carbon source
M9+sucrose
+0.0
-1.6
+0.1
N.D.
N.D.
carbon source
M9+polygalacturonate
-0.0
-1.6
+0.2
N.D.
N.D.
carbon source
M9+sucrose
+0.1
-1.6
+0.2
N.D.
N.D.
carbon source
M9+polygalacturonate
-0.0
-1.5
+0.3
N.D.
N.D.
carbon source
M9+glycerol
+0.0
-1.0
-0.0
N.D.
N.D.
carbon source
M9+glycerol
-0.1
-0.3
-0.4
N.D.
N.D.
carbon source
M9+polygalacturonate
+0.1
-1.2
+0.2
N.D.
N.D.
carbon source
M9+glycerol
-0.0
-0.2
-0.6
N.D.
N.D.
carbon source
M9+glycerol
-0.0
-0.6
-0.0
N.D.
N.D.
carbon source
M9+glycerol
-0.0
-0.7
+0.2
N.D.
N.D.
plant
Norland
-0.2
-0.1
-0.3
N.D.
N.D.
plant
Atlantic
-0.3
+0.3
-0.4
N.D.
N.D.
control
PDB
+0.0
-0.4
-0.0
N.D.
N.D.
control
PDB
-0.1
-0.2
-0.0
N.D.
N.D.
plant
Upstate
-0.2
+0.1
-0.2
N.D.
N.D.
control
PDB
-0.0
-0.2
-0.0
N.D.
N.D.
control
PDB
-0.0
-0.3
+0.1
N.D.
N.D.
plant
Atlantic
-0.2
-0.1
+0.0
N.D.
N.D.
plant
Norland
+0.0
-0.3
+0.2
N.D.
N.D.
control
PDB
-0.1
-0.0
+0.1
N.D.
N.D.
carbon source
M9+glycerol
+0.1
-0.3
+0.2
N.D.
N.D.
control
LB
-0.1
+0.0
+0.1
N.D.
N.D.
control
LB
-0.1
-0.1
+0.2
N.D.
N.D.
control
PDB
-0.1
-0.1
+0.2
N.D.
N.D.
plant
Atlantic
-0.1
+0.2
+0.0
N.D.
N.D.
plant
Upstate
-0.1
+0.0
+0.2
N.D.
N.D.
plant
Norland
+0.1
+0.1
+0.1
N.D.
N.D.
plant
Atlantic
+0.0
+0.4
+0.0
N.D.
N.D.
plant
Atlantic
+0.1
+0.2
+0.3
N.D.
N.D.
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