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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04910 and HGI48_RS04915 are separated by 158 nucleotides
HGI48_RS04915 and HGI48_RS04920 overlap by 1 nucleotides
HGI48_RS04920 and HGI48_RS04925 are separated by 112 nucleotides
HGI48_RS04925 and HGI48_RS04930 are separated by 502 nucleotides
HGI48_RS04910: HGI48_RS04910 - A/G-specific adenine glycosylase, at 1,029,088 to 1,030,173
_RS04910
HGI48_RS04915: HGI48_RS04915 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 1,030,332 to 1,031,051
_RS04915
HGI48_RS04920: HGI48_RS04920 - YggL family protein, at 1,031,051 to 1,031,395
_RS04920
HGI48_RS04925: HGI48_RS04925 - DUF2884 family protein, at 1,031,508 to 1,032,224
_RS04925
HGI48_RS04930: HGI48_RS04930 - autotransporter domain-containing protein, at 1,032,727 to 1,035,897
_RS04930
Group
Condition
HGI48
_RS04910
HGI48
_RS04915
HGI48
_RS04920
HGI48
_RS04925
HGI48
_RS04930
carbon source
M9+glycerol
-0.0
-1.1
-0.1
-0.7
-0.0
carbon source
M9+glycerol
-0.4
-0.7
-0.2
-0.6
+0.1
plant
Norland
-0.2
-1.3
+0.1
-0.1
-0.1
carbon source
M9+glycerol
-0.0
-0.4
-0.3
-0.8
+0.0
carbon source
M9+polygalacturonate
-0.4
+0.2
-0.3
-0.6
+0.0
carbon source
M9+glycerol
-0.3
-0.3
-0.2
-0.3
+0.1
plant
Atlantic
-0.8
-0.8
+0.1
+0.4
+0.1
carbon source
M9+sucrose
-0.0
+0.1
+0.0
-0.8
-0.0
plant
Atlantic
-0.2
-0.4
+0.1
+0.2
-0.3
control
PDB
-0.0
-0.5
-0.4
+0.3
+0.0
plant
Atlantic
-0.3
+0.1
-0.2
+0.0
-0.1
plant
Norland
-0.1
-0.5
-0.0
+0.2
-0.1
plant
Upstate
-0.3
-0.5
+0.1
+0.3
-0.1
control
PDB
-0.3
+0.2
-0.1
-0.1
+0.1
plant
Upstate
-0.1
-0.5
-0.0
+0.4
+0.0
plant
Atlantic
-0.1
-0.3
+0.0
+0.4
-0.2
control
LB
-0.1
-0.4
-0.0
+0.4
+0.0
control
LB
-0.5
+0.1
-0.2
+0.5
+0.0
plant
Norland
-0.2
-0.3
+0.0
+0.4
+0.1
carbon source
M9+glycerol
-0.1
-0.2
-0.1
+0.3
+0.1
plant
Norland
-0.1
+0.2
-0.4
+0.4
+0.0
control
PDB
-0.2
+0.2
-0.3
+0.4
-0.0
plant
Upstate
+0.2
-0.2
-0.1
+0.2
+0.0
carbon source
M9+sucrose
+0.0
+1.0
-0.4
-0.5
+0.1
plant
Atlantic
-0.0
+0.3
-0.2
+0.3
-0.1
carbon source
M9+polygalacturonate
+0.2
+0.2
-0.1
+0.2
-0.0
control
PDB
-0.1
+0.3
-0.1
+0.3
+0.1
control
PDB
+0.0
+0.2
-0.3
+0.5
+0.2
plant
Norland
+0.3
-0.0
-0.2
+0.5
+0.0
carbon source
M9+sucrose
+0.0
+0.7
-0.1
+0.1
+0.0
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