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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04670 and HGI48_RS04675 are separated by 300 nucleotides
HGI48_RS04675 and HGI48_RS04680 are separated by 1840 nucleotides
HGI48_RS04680 and HGI48_RS04685 are separated by 70 nucleotides
HGI48_RS04685 and HGI48_RS04690 are separated by 111 nucleotides
HGI48_RS04670: HGI48_RS04670 - transposase, at 981,829 to 981,960
_RS04670
HGI48_RS04675: HGI48_RS04675 - alpha/beta hydrolase, at 982,261 to 983,001
_RS04675
HGI48_RS04680: HGI48_RS04680 - Expansin-YoaJ, at 984,842 to 985,567
_RS04680
HGI48_RS04685: HGI48_RS04685 - glycoside hydrolase family 5 protein, at 985,638 to 986,585
_RS04685
HGI48_RS04690: HGI48_RS04690 - CcdB family protein, at 986,697 to 986,858
_RS04690
Group
Condition
HGI48
_RS04670
HGI48
_RS04675
HGI48
_RS04680
HGI48
_RS04685
HGI48
_RS04690
plant
Norland
-1.1
-0.1
+0.1
+0.2
-0.3
control
PDB
-0.1
-0.5
-0.1
+0.0
-0.4
carbon source
M9+glycerol
-1.6
+0.3
+0.3
+0.0
+0.0
control
PDB
+0.2
-0.7
-0.1
+0.1
-0.2
carbon source
M9+polygalacturonate
-0.0
+0.2
+0.1
-0.2
-0.8
plant
Atlantic
-0.7
-0.1
-0.1
-0.2
+0.4
plant
Atlantic
-0.2
+0.3
+0.1
+0.1
-0.9
control
PDB
+0.4
-0.7
-0.0
-0.2
-0.0
carbon source
M9+glycerol
-0.2
+0.1
+0.3
+0.1
-0.7
carbon source
M9+sucrose
+0.3
+0.2
-0.1
+0.1
-0.5
plant
Upstate
-0.9
+0.3
+0.1
-0.0
+0.5
carbon source
M9+polygalacturonate
-0.4
+0.3
+0.0
+0.2
-0.2
carbon source
M9+glycerol
-0.4
-0.1
+0.2
+0.2
+0.1
control
PDB
+0.4
-0.1
+0.2
+0.1
-0.6
plant
Atlantic
-0.7
+0.5
+0.1
-0.3
+0.4
plant
Upstate
-0.3
+0.3
-0.1
-0.1
+0.4
carbon source
M9+sucrose
+0.8
+0.0
-0.5
-0.0
-0.2
plant
Norland
+0.8
+0.0
-0.1
-0.0
-0.4
carbon source
M9+glycerol
+0.1
+0.2
+0.2
-0.2
+0.1
carbon source
M9+glycerol
-0.0
+0.3
+0.1
-0.0
+0.4
carbon source
M9+glycerol
+0.3
+0.5
+0.0
+0.2
-0.1
plant
Atlantic
+0.5
+0.4
-0.1
+0.1
+0.2
plant
Norland
+0.7
+0.2
+0.0
+0.1
+0.1
plant
Upstate
+0.7
-0.1
+0.3
-0.0
+0.3
plant
Norland
+0.5
+0.3
+0.2
+0.0
+0.2
plant
Upstate
+0.8
+0.3
+0.3
+0.1
-0.2
plant
Atlantic
+1.2
+0.5
+0.3
-0.4
-0.1
carbon source
M9+polygalacturonate
+0.7
+0.5
+0.1
+0.1
-0.0
plant
Upstate
+1.4
+0.1
-0.1
+0.1
+0.0
plant
Atlantic
+1.2
-0.1
+0.1
-0.1
+0.6
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