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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04615 and HGI48_RS04620 are separated by 5 nucleotides
HGI48_RS04620 and HGI48_RS04625 are separated by 0 nucleotides
HGI48_RS04625 and HGI48_RS04630 are separated by 675 nucleotides
HGI48_RS04630 and HGI48_RS04635 are separated by 333 nucleotides
HGI48_RS04615: HGI48_RS04615 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 967,111 to 967,953
_RS04615
HGI48_RS04620: HGI48_RS04620 - queuosine precursor transporter, at 967,959 to 968,834
_RS04620
HGI48_RS04625: HGI48_RS04625 - helix-turn-helix domain-containing protein, at 968,835 to 969,449
_RS04625
HGI48_RS04630: HGI48_RS04630 - rhamnogalacturonate lyase, at 970,125 to 971,855
_RS04630
HGI48_RS04635: HGI48_RS04635 - TIGR00645 family protein, at 972,189 to 972,722
_RS04635
Group
Condition
HGI48
_RS04615
HGI48
_RS04620
HGI48
_RS04625
HGI48
_RS04630
HGI48
_RS04635
carbon source
M9+sucrose
+0.2
+0.2
-0.4
-0.3
-0.6
plant
Norland
-0.0
-0.3
+0.2
-0.1
-0.5
plant
Upstate
+0.3
+0.0
-0.3
-0.2
-0.5
carbon source
M9+polygalacturonate
+0.8
-0.1
-0.4
-0.0
-0.6
plant
Norland
+0.1
-0.0
+0.3
-0.3
-0.3
plant
Upstate
+0.2
+0.0
+0.1
-0.1
-0.4
plant
Upstate
+0.2
-0.2
+0.2
-0.1
-0.4
plant
Atlantic
+0.2
+0.1
+0.2
-0.0
-0.5
control
LB
-0.2
+0.2
+0.1
+0.1
-0.3
control
PDB
+0.3
+0.2
-0.2
+0.0
-0.4
carbon source
M9+polygalacturonate
+0.7
+0.3
-0.3
-0.1
-0.5
plant
Atlantic
+0.3
-0.2
+0.1
-0.3
+0.2
plant
Norland
+0.2
+0.3
-0.0
-0.0
-0.3
plant
Upstate
-0.1
+0.2
+0.4
-0.2
-0.2
plant
Atlantic
+0.2
+0.2
-0.0
+0.0
-0.3
carbon source
M9+sucrose
+0.4
+0.2
-0.2
+0.1
-0.3
control
PDB
+0.3
+0.4
-0.2
-0.1
-0.1
carbon source
M9+glycerol
+0.5
-0.1
+0.2
+0.1
-0.3
control
PDB
+0.2
+0.5
+0.3
-0.0
-0.5
control
PDB
+0.6
+0.5
-0.4
+0.1
-0.2
control
PDB
+0.4
+0.5
-0.1
+0.1
-0.2
plant
Atlantic
+0.5
+0.4
+0.4
+0.1
-0.5
carbon source
M9+polygalacturonate
+1.0
+0.3
-0.1
+0.3
-0.3
plant
Atlantic
+0.2
-0.0
+0.1
+0.3
+0.5
control
PDB
+0.4
+0.4
+0.2
-0.1
+0.2
carbon source
M9+glycerol
+1.1
+0.1
+0.4
+0.1
-0.4
carbon source
M9+glycerol
+1.0
+0.1
+0.6
-0.2
-0.1
carbon source
M9+glycerol
+1.4
-0.4
+0.5
-0.1
+0.2
carbon source
M9+glycerol
+1.2
-0.1
+0.6
+0.1
-0.3
carbon source
M9+glycerol
+1.0
+0.1
+0.6
+0.2
+0.1
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