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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04540 and HGI48_RS04545 overlap by 8 nucleotides
HGI48_RS04545 and HGI48_RS04550 are separated by 520 nucleotides
HGI48_RS04550 and HGI48_RS04555 are separated by 188 nucleotides
HGI48_RS04555 and HGI48_RS04560 are separated by 59 nucleotides
HGI48_RS04540: HGI48_RS04540 - cytochrome c nitrite reductase subunit NrfD, at 951,980 to 952,936
_RS04540
HGI48_RS04545: HGI48_RS04545 - 4Fe-4S dicluster domain-containing protein, at 952,929 to 953,627
_RS04545
HGI48_RS04550: HGI48_RS04550 - alpha/beta hydrolase, at 954,148 to 955,122
_RS04550
HGI48_RS04555: HGI48_RS04555 - LysR family transcriptional regulator, at 955,311 to 956,213
_RS04555
HGI48_RS04560: HGI48_RS04560 - LacI family DNA-binding transcriptional regulator, at 956,273 to 957,259
_RS04560
Group
Condition
HGI48
_RS04540
HGI48
_RS04545
HGI48
_RS04550
HGI48
_RS04555
HGI48
_RS04560
carbon source
M9+glycerol
-0.3
-0.4
-0.1
+0.0
-0.7
plant
Atlantic
-0.4
-0.4
-0.3
-0.3
+0.6
plant
Atlantic
-0.1
-0.2
-0.1
+0.1
-0.5
carbon source
M9+glycerol
-0.1
-0.0
-0.4
-0.1
+0.0
plant
Upstate
-0.1
-0.1
-0.1
+0.3
-0.5
plant
Atlantic
+0.1
+0.0
-0.6
+0.0
+0.2
control
LB
-0.1
-0.1
-0.1
-0.0
+0.4
carbon source
M9+glycerol
+0.1
-0.4
+0.0
-0.2
+0.6
plant
Upstate
+0.1
-0.1
-0.3
-0.0
+0.5
plant
Norland
-0.0
-0.2
-0.1
-0.1
+0.5
carbon source
M9+sucrose
+0.0
+0.3
+0.2
+0.0
-0.4
carbon source
M9+glycerol
-0.3
-0.2
-0.1
+0.3
+0.5
carbon source
M9+sucrose
-0.2
+0.2
+0.3
+0.2
-0.3
control
PDB
+0.2
-0.1
-0.2
-0.2
+0.6
carbon source
M9+sucrose
-0.1
+0.3
-0.1
-0.2
+0.4
carbon source
M9+polygalacturonate
-0.2
-0.2
+0.2
+0.4
+0.0
control
PDB
-0.2
-0.2
+0.2
-0.0
+0.7
plant
Norland
+0.2
+0.2
-0.3
-0.1
+0.5
control
PDB
+0.1
-0.1
+0.0
-0.1
+0.5
plant
Upstate
-0.2
+0.1
-0.0
+0.3
+0.3
plant
Atlantic
-0.0
-0.3
+0.2
-0.0
+0.6
plant
Upstate
+0.1
-0.1
+0.0
-0.0
+0.6
control
PDB
-0.1
+0.1
-0.0
+0.0
+0.7
control
PDB
+0.0
-0.3
+0.1
-0.2
+1.0
plant
Norland
-0.1
-0.1
-0.2
-0.2
+1.4
plant
Atlantic
-0.1
+0.1
-0.0
+0.1
+0.7
control
LB
+0.0
+0.0
-0.3
+0.0
+1.1
plant
Atlantic
+0.4
-0.0
+0.0
-0.2
+0.7
carbon source
M9+glycerol
-0.0
-0.0
-0.1
+0.1
+1.0
plant
Norland
-0.2
+0.2
-0.3
+0.2
+1.1
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