Fitness for 5 genes in Dickeya dianthicola 67-19

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500 ntHGI48_RS04540 and HGI48_RS04545 overlap by 8 nucleotidesHGI48_RS04545 and HGI48_RS04550 are separated by 520 nucleotidesHGI48_RS04550 and HGI48_RS04555 are separated by 188 nucleotidesHGI48_RS04555 and HGI48_RS04560 are separated by 59 nucleotides HGI48_RS04540: HGI48_RS04540 - cytochrome c nitrite reductase subunit NrfD, at 951,980 to 952,936 _RS04540 HGI48_RS04545: HGI48_RS04545 - 4Fe-4S dicluster domain-containing protein, at 952,929 to 953,627 _RS04545 HGI48_RS04550: HGI48_RS04550 - alpha/beta hydrolase, at 954,148 to 955,122 _RS04550 HGI48_RS04555: HGI48_RS04555 - LysR family transcriptional regulator, at 955,311 to 956,213 _RS04555 HGI48_RS04560: HGI48_RS04560 - LacI family DNA-binding transcriptional regulator, at 956,273 to 957,259 _RS04560
Group Condition HGI48_RS04540 HGI48_RS04545 HGI48_RS04550 HGI48_RS04555 HGI48_RS04560
carbon source M9+glycerol -0.3 -0.4 -0.1 +0.0 -0.7
plant Atlantic -0.4 -0.4 -0.3 -0.3 +0.6
plant Atlantic -0.1 -0.2 -0.1 +0.1 -0.5
carbon source M9+glycerol -0.1 -0.0 -0.4 -0.1 +0.0
plant Upstate -0.1 -0.1 -0.1 +0.3 -0.5
plant Atlantic +0.1 +0.0 -0.6 +0.0 +0.2
control LB -0.1 -0.1 -0.1 -0.0 +0.4
carbon source M9+glycerol +0.1 -0.4 +0.0 -0.2 +0.6
plant Upstate +0.1 -0.1 -0.3 -0.0 +0.5
plant Norland -0.0 -0.2 -0.1 -0.1 +0.5
carbon source M9+sucrose +0.0 +0.3 +0.2 +0.0 -0.4
carbon source M9+glycerol -0.3 -0.2 -0.1 +0.3 +0.5
carbon source M9+sucrose -0.2 +0.2 +0.3 +0.2 -0.3
control PDB +0.2 -0.1 -0.2 -0.2 +0.6
carbon source M9+sucrose -0.1 +0.3 -0.1 -0.2 +0.4
carbon source M9+polygalacturonate -0.2 -0.2 +0.2 +0.4 +0.0
control PDB -0.2 -0.2 +0.2 -0.0 +0.7
plant Norland +0.2 +0.2 -0.3 -0.1 +0.5
control PDB +0.1 -0.1 +0.0 -0.1 +0.5
plant Upstate -0.2 +0.1 -0.0 +0.3 +0.3
plant Atlantic -0.0 -0.3 +0.2 -0.0 +0.6
plant Upstate +0.1 -0.1 +0.0 -0.0 +0.6
control PDB -0.1 +0.1 -0.0 +0.0 +0.7
control PDB +0.0 -0.3 +0.1 -0.2 +1.0
plant Norland -0.1 -0.1 -0.2 -0.2 +1.4
plant Atlantic -0.1 +0.1 -0.0 +0.1 +0.7
control LB +0.0 +0.0 -0.3 +0.0 +1.1
plant Atlantic +0.4 -0.0 +0.0 -0.2 +0.7
carbon source M9+glycerol -0.0 -0.0 -0.1 +0.1 +1.0
plant Norland -0.2 +0.2 -0.3 +0.2 +1.1
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