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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04520 and HGI48_RS04525 are separated by 30 nucleotides
HGI48_RS04525 and HGI48_RS04530 are separated by 62 nucleotides
HGI48_RS04530 and HGI48_RS04535 are separated by 77 nucleotides
HGI48_RS04535 and HGI48_RS04540 are separated by 2 nucleotides
HGI48_RS04520: HGI48_RS04520 - DNA oxidative demethylase AlkB, at 947,852 to 948,505
_RS04520
HGI48_RS04525: HGI48_RS04525 - FAD-dependent oxidoreductase, at 948,536 to 950,107
_RS04525
HGI48_RS04530: HGI48_RS04530 - FMN-binding protein, at 950,170 to 950,520
_RS04530
HGI48_RS04535: HGI48_RS04535 - MFS transporter, at 950,598 to 951,977
_RS04535
HGI48_RS04540: HGI48_RS04540 - cytochrome c nitrite reductase subunit NrfD, at 951,980 to 952,936
_RS04540
Group
Condition
HGI48
_RS04520
HGI48
_RS04525
HGI48
_RS04530
HGI48
_RS04535
HGI48
_RS04540
carbon source
M9+glycerol
-0.8
+0.2
-0.4
-0.2
-0.0
plant
Atlantic
+0.1
+0.2
-1.2
+0.3
-0.4
carbon source
M9+glycerol
-0.2
-0.0
-0.7
+0.0
-0.1
carbon source
M9+glycerol
-0.0
-0.4
-0.4
+0.3
-0.3
plant
Upstate
+0.1
+0.1
-0.5
-0.3
-0.2
control
LB
-0.0
+0.1
-0.3
-0.5
+0.0
control
PDB
+0.2
-0.1
-0.2
-0.4
-0.1
plant
Norland
+0.1
+0.0
-0.5
+0.1
-0.1
control
PDB
-0.2
+0.2
+0.0
-0.4
+0.0
carbon source
M9+sucrose
+0.2
-0.1
-0.5
+0.3
-0.2
control
PDB
+0.5
+0.2
-0.7
-0.0
-0.2
carbon source
M9+sucrose
+0.0
+0.0
+0.2
-0.4
+0.0
carbon source
M9+glycerol
+0.3
+0.1
-0.0
-0.2
-0.3
plant
Atlantic
-0.0
+0.3
+0.1
-0.4
-0.1
carbon source
M9+glycerol
+0.2
+0.2
-0.2
-0.1
+0.1
plant
Upstate
-0.1
+0.3
+0.0
-0.2
+0.1
control
PDB
+0.3
+0.0
-0.3
+0.1
+0.0
plant
Atlantic
-0.1
+0.3
-0.3
-0.0
+0.4
plant
Atlantic
+0.6
+0.2
-0.3
-0.0
-0.1
carbon source
M9+polygalacturonate
-0.0
-0.1
-0.1
+0.8
-0.2
plant
Atlantic
+0.5
+0.1
-0.4
+0.0
+0.1
carbon source
M9+polygalacturonate
+0.1
-0.2
-0.0
+0.5
+0.0
control
PDB
+0.5
+0.2
-0.1
-0.3
+0.2
plant
Atlantic
+0.1
+0.0
+0.6
-0.1
-0.0
plant
Norland
+0.4
+0.2
-0.1
+0.2
-0.2
control
LB
+0.5
+0.3
-0.2
-0.1
+0.1
plant
Norland
+0.1
+0.3
+0.3
-0.1
+0.2
plant
Upstate
+0.2
+0.3
+0.2
+0.1
+0.1
carbon source
M9+sucrose
+0.1
-0.2
+0.3
+0.8
-0.1
plant
Norland
+0.3
+0.1
+0.7
-0.0
-0.0
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