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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04500 and HGI48_RS04505 are separated by 463 nucleotides
HGI48_RS04505 and HGI48_RS04510 are separated by 106 nucleotides
HGI48_RS04510 and HGI48_RS04515 are separated by 91 nucleotides
HGI48_RS04515 and HGI48_RS04520 are separated by 98 nucleotides
HGI48_RS04500: HGI48_RS04500 - fumarate hydratase, at 943,443 to 945,086
_RS04500
HGI48_RS04505: HGI48_RS04505 - LysR family transcriptional regulator, at 945,550 to 946,416
_RS04505
HGI48_RS04510: HGI48_RS04510 - multidrug/biocide efflux PACE transporter, at 946,523 to 946,987
_RS04510
HGI48_RS04515: HGI48_RS04515 - DNA-3-methyladenine glycosylase 2 family protein, at 947,079 to 947,753
_RS04515
HGI48_RS04520: HGI48_RS04520 - DNA oxidative demethylase AlkB, at 947,852 to 948,505
_RS04520
Group
Condition
HGI48
_RS04500
HGI48
_RS04505
HGI48
_RS04510
HGI48
_RS04515
HGI48
_RS04520
carbon source
M9+polygalacturonate
-0.4
-0.4
-0.1
-0.4
-0.0
plant
Norland
-0.4
-0.4
-0.2
-0.2
+0.1
plant
Upstate
-0.3
-0.4
+0.0
-0.3
-0.1
plant
Atlantic
-0.7
+0.1
-0.2
-0.1
-0.0
carbon source
M9+glycerol
+0.0
-0.2
-0.3
-0.3
-0.2
carbon source
M9+glycerol
-0.0
+0.4
-0.2
-0.2
-0.8
plant
Norland
-0.4
-0.3
-0.2
-0.0
+0.3
carbon source
M9+polygalacturonate
-0.7
+0.4
+0.0
-0.5
+0.1
control
PDB
-0.5
+0.1
+0.1
-0.2
-0.0
plant
Atlantic
-0.2
-0.3
+0.4
-0.3
+0.1
carbon source
M9+polygalacturonate
-0.3
-0.3
-0.1
+0.2
+0.1
control
LB
-0.5
+0.2
-0.1
+0.1
-0.0
control
PDB
-0.5
-0.1
+0.1
+0.4
-0.2
carbon source
M9+glycerol
-0.0
-0.6
+0.5
-0.2
-0.0
control
PDB
-0.4
+0.0
-0.2
-0.0
+0.3
plant
Atlantic
-0.1
+0.2
+0.4
-0.8
+0.1
control
LB
-0.3
+0.4
-0.0
-0.2
+0.0
control
PDB
-0.6
-0.0
+0.1
+0.2
+0.2
plant
Norland
-0.4
+0.1
+0.1
-0.1
+0.3
plant
Upstate
-0.4
+0.2
+0.0
+0.1
+0.2
carbon source
M9+sucrose
-0.3
+0.1
+0.1
+0.1
+0.2
control
PDB
-0.6
+0.1
+0.1
+0.2
+0.5
plant
Norland
-0.3
+0.6
-0.2
+0.1
+0.1
plant
Norland
-0.6
+0.4
-0.1
+0.2
+0.4
plant
Atlantic
-0.2
-0.3
+0.4
-0.2
+0.6
control
PDB
-0.6
+0.2
+0.1
+0.1
+0.5
control
LB
-0.5
+0.0
+0.2
+0.2
+0.5
carbon source
M9+glycerol
+0.2
+0.3
-0.2
+0.1
+0.3
plant
Atlantic
-0.5
+1.0
-0.2
+0.3
+0.5
carbon source
M9+sucrose
-0.1
+0.6
+0.3
+0.3
+0.1
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