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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04380 and HGI48_RS04385 are separated by 35 nucleotides
HGI48_RS04385 and HGI48_RS04390 are separated by 15 nucleotides
HGI48_RS04390 and HGI48_RS04395 are separated by 241 nucleotides
HGI48_RS04395 and HGI48_RS04400 are separated by 83 nucleotides
HGI48_RS04380: HGI48_RS04380 - GNAT family N-acetyltransferase, at 918,053 to 918,466
_RS04380
HGI48_RS04385: HGI48_RS04385 - LuxR family transcriptional regulator, at 918,502 to 919,191
_RS04385
HGI48_RS04390: HGI48_RS04390 - cytosine permease, at 919,207 to 920,502
_RS04390
HGI48_RS04395: HGI48_RS04395 - Dyp-type peroxidase, at 920,744 to 921,643
_RS04395
HGI48_RS04400: HGI48_RS04400 - cysteine synthase CysM, at 921,727 to 922,608
_RS04400
Group
Condition
HGI48
_RS04380
HGI48
_RS04385
HGI48
_RS04390
HGI48
_RS04395
HGI48
_RS04400
carbon source
M9+sucrose
-0.2
-0.3
-0.3
-1.8
-0.1
carbon source
M9+sucrose
-0.1
+0.9
-0.1
-3.2
-0.1
plant
Atlantic
+0.9
-3.2
+0.1
-0.1
-0.2
control
LB
-0.0
+0.0
-0.2
-1.7
-0.1
control
LB
+0.0
-0.0
-0.0
-2.0
+0.0
carbon source
M9+sucrose
+0.0
+0.3
+0.0
-2.3
+0.2
control
LB
-0.2
+0.1
-0.1
-1.2
-0.1
control
LB
-0.3
+0.6
-0.1
-1.6
-0.2
carbon source
M9+polygalacturonate
+0.3
+0.5
-0.3
-1.6
-0.2
carbon source
M9+polygalacturonate
+0.0
+0.6
-0.3
-1.7
+0.1
control
PDB
-0.2
+0.1
-0.3
-0.4
-0.3
carbon source
M9+polygalacturonate
+0.3
+0.2
+0.3
-1.1
-0.1
control
PDB
+0.1
+0.4
+0.0
-1.0
+0.2
control
PDB
+0.3
+0.2
-0.2
-0.7
+0.1
plant
Norland
+0.4
-0.5
-0.1
-0.3
+0.2
carbon source
M9+glycerol
+0.1
+0.5
-0.2
-0.4
+0.1
plant
Upstate
+0.0
+0.5
-0.3
-0.4
+0.3
control
PDB
+0.3
+0.4
-0.1
-0.6
+0.2
plant
Norland
+0.7
+0.1
-0.4
+0.0
-0.1
plant
Upstate
+0.7
+0.3
-0.1
-0.2
-0.1
plant
Atlantic
+0.8
-0.1
-0.1
+0.4
-0.1
plant
Atlantic
+0.1
+0.3
-0.3
+0.3
+0.4
plant
Upstate
+0.5
+0.5
-0.2
+0.1
-0.1
control
PDB
+0.5
+0.8
+0.1
-0.6
+0.2
plant
Upstate
+0.8
+0.2
+0.0
-0.1
-0.0
plant
Atlantic
-0.1
+1.3
-0.1
-0.4
+0.3
plant
Atlantic
+0.8
+0.6
-0.4
-0.2
+0.2
plant
Norland
+1.2
+0.0
-0.1
-0.2
+0.2
plant
Atlantic
+1.1
-0.0
+0.1
-0.2
+0.4
plant
Norland
+1.2
+0.3
-0.1
+0.0
+0.3
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