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Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04345 and HGI48_RS04350 are separated by 57 nucleotides
HGI48_RS04350 and HGI48_RS04355 overlap by 4 nucleotides
HGI48_RS04355 and HGI48_RS04360 are separated by 213 nucleotides
HGI48_RS04360 and HGI48_RS04365 are separated by 524 nucleotides
HGI48_RS04345: HGI48_RS04345 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 910,013 to 912,292
_RS04345
HGI48_RS04350: HGI48_RS04350 - YaiI/YqxD family protein, at 912,350 to 912,799
_RS04350
HGI48_RS04355: HGI48_RS04355 - oxygen-dependent coproporphyrinogen oxidase, at 912,796 to 913,734
_RS04355
HGI48_RS04360: HGI48_RS04360 - GNAT family acetyltransferase, at 913,948 to 914,373
_RS04360
HGI48_RS04365: HGI48_RS04365 - RpoE-regulated lipoprotein, at 914,898 to 915,506
_RS04365
Group
Condition
HGI48
_RS04345
HGI48
_RS04350
HGI48
_RS04355
HGI48
_RS04360
HGI48
_RS04365
carbon source
M9+sucrose
+0.2
-0.3
-2.6
-0.1
-0.2
control
LB
+0.0
-0.1
-1.8
-0.2
-0.5
control
LB
+0.0
-0.9
-1.9
-0.1
+0.4
carbon source
M9+sucrose
+0.1
-0.6
-1.8
+0.0
+0.1
plant
Atlantic
-0.4
-1.2
+0.8
-0.6
-0.4
carbon source
M9+polygalacturonate
+0.4
-0.6
-0.8
+0.1
-1.0
control
LB
-0.1
-0.2
-0.9
+0.1
-0.7
carbon source
M9+polygalacturonate
+0.3
+0.8
-2.2
-0.3
-0.4
carbon source
M9+glycerol
-0.0
-1.6
+0.3
-0.5
+0.4
control
LB
-0.2
+0.3
-0.8
+0.0
-0.7
carbon source
M9+polygalacturonate
+0.1
-0.0
-0.7
-0.3
-0.4
carbon source
M9+glycerol
-0.0
-0.5
+0.8
-0.1
-1.2
plant
Norland
-0.1
-0.7
+0.3
-0.0
-0.3
plant
Atlantic
-0.2
+0.7
-0.6
-0.2
-0.5
plant
Upstate
-0.2
-0.7
+0.7
-0.1
-0.5
carbon source
M9+glycerol
-0.2
-0.1
+0.4
-0.2
-0.6
plant
Atlantic
-0.1
-0.7
+0.3
+0.3
-0.5
plant
Upstate
-0.2
-0.2
+0.7
-0.1
-0.8
plant
Norland
-0.3
-0.6
-0.1
-0.0
+0.4
carbon source
M9+sucrose
+0.1
+0.5
-1.3
+0.1
-0.0
plant
Norland
-0.1
+0.3
+0.3
-0.2
-0.5
plant
Norland
-0.1
-0.3
+0.9
-0.2
-0.2
plant
Atlantic
-0.5
-0.2
+0.1
+0.0
+0.8
plant
Upstate
-0.2
-0.2
+0.9
+0.0
-0.2
control
PDB
-0.0
-0.4
+1.0
-0.0
-0.0
control
PDB
-0.2
-0.6
+1.1
+0.2
+0.4
carbon source
M9+glycerol
-0.2
+0.7
+0.7
+0.0
-0.2
control
PDB
-0.2
+0.5
+1.2
-0.1
-0.3
control
PDB
-0.1
+0.3
+0.8
+0.1
+0.6
control
PDB
-0.0
+0.2
+1.5
-0.0
+0.5
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