Fitness for 5 genes in Dickeya dianthicola 67-19

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500 ntHGI48_RS04290 and HGI48_RS04300 are separated by 598 nucleotidesHGI48_RS04300 and HGI48_RS04305 are separated by 155 nucleotidesHGI48_RS04305 and HGI48_RS04310 overlap by 8 nucleotidesHGI48_RS04310 and HGI48_RS04315 are separated by 58 nucleotides HGI48_RS04290: HGI48_RS04290 - tyrosine-type recombinase/integrase, at 900,160 to 901,380 _RS04290 HGI48_RS04300: HGI48_RS04300 - SsrA-binding protein SmpB, at 901,979 to 902,461 _RS04300 HGI48_RS04305: HGI48_RS04305 - type II toxin-antitoxin system RatA family toxin, at 902,617 to 903,051 _RS04305 HGI48_RS04310: HGI48_RS04310 - RnfH family protein, at 903,044 to 903,337 _RS04310 HGI48_RS04315: HGI48_RS04315 - outer membrane protein assembly factor BamE, at 903,396 to 903,740 _RS04315
Group Condition HGI48_RS04290 HGI48_RS04300 HGI48_RS04305 HGI48_RS04310 HGI48_RS04315
carbon source M9+sucrose -0.1 -0.5 -0.6 N.D. -2.0
carbon source M9+polygalacturonate -0.1 -0.7 -0.4 N.D. -2.0
plant Norland -0.1 +0.2 -1.3 N.D. -1.1
plant Upstate -0.0 -0.5 -0.7 N.D. -1.0
plant Atlantic -0.1 +0.1 -0.9 N.D. -1.3
plant Atlantic -0.3 +0.0 -0.8 N.D. -1.1
plant Upstate +0.1 +0.4 -1.7 N.D. -0.9
carbon source M9+sucrose -0.0 +0.4 -1.1 N.D. -1.1
plant Norland -0.2 +0.1 -0.6 N.D. -1.1
control LB +0.1 +0.3 -1.0 N.D. -1.1
plant Upstate -0.2 -0.2 -0.1 N.D. -1.1
carbon source M9+polygalacturonate +0.1 -0.3 +0.1 N.D. -1.5
plant Norland +0.1 +0.1 -0.8 N.D. -0.9
carbon source M9+sucrose +0.2 -0.1 -0.3 N.D. -1.2
carbon source M9+polygalacturonate -0.1 +0.2 +0.0 N.D. -1.5
control LB -0.1 +0.4 -0.9 N.D. -0.7
plant Norland +0.1 +0.7 -1.1 N.D. -1.0
plant Atlantic +0.3 -0.3 +0.2 N.D. -1.5
control LB +0.2 +0.5 -0.9 N.D. -0.9
plant Atlantic +0.3 -0.1 -0.4 N.D. -0.8
plant Norland -0.0 +0.6 -0.8 N.D. -0.8
plant Upstate +0.1 +0.6 -0.0 N.D. -1.5
control PDB -0.1 +0.5 +0.2 N.D. -1.3
plant Upstate +0.0 +0.7 -0.7 N.D. -0.8
plant Atlantic +0.3 +0.3 +0.1 N.D. -0.9
carbon source M9+glycerol +0.1 +1.2 +0.0 N.D. -1.4
control PDB +0.1 +0.2 +0.7 N.D. -1.1
carbon source M9+glycerol +0.1 +0.6 +0.4 N.D. -1.1
control PDB -0.1 +0.6 +0.8 N.D. -0.8
control PDB -0.0 +0.4 +0.7 N.D. -0.5
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