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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04285 and HGI48_RS04290 are separated by 76 nucleotides
HGI48_RS04290 and HGI48_RS04300 are separated by 598 nucleotides
HGI48_RS04300 and HGI48_RS04305 are separated by 155 nucleotides
HGI48_RS04305 and HGI48_RS04310 overlap by 8 nucleotides
HGI48_RS04285: HGI48_RS04285 - hypothetical protein, at 898,338 to 900,083
_RS04285
HGI48_RS04290: HGI48_RS04290 - tyrosine-type recombinase/integrase, at 900,160 to 901,380
_RS04290
HGI48_RS04300: HGI48_RS04300 - SsrA-binding protein SmpB, at 901,979 to 902,461
_RS04300
HGI48_RS04305: HGI48_RS04305 - type II toxin-antitoxin system RatA family toxin, at 902,617 to 903,051
_RS04305
HGI48_RS04310: HGI48_RS04310 - RnfH family protein, at 903,044 to 903,337
_RS04310
Group
Condition
HGI48
_RS04285
HGI48
_RS04290
HGI48
_RS04300
HGI48
_RS04305
HGI48
_RS04310
carbon source
M9+polygalacturonate
-0.6
-0.1
-0.7
-0.4
N.D.
carbon source
M9+sucrose
-0.2
-0.1
-0.5
-0.6
N.D.
plant
Upstate
-0.1
+0.1
+0.4
-1.7
N.D.
plant
Norland
+0.0
-0.1
+0.2
-1.3
N.D.
plant
Atlantic
-0.0
-0.3
+0.0
-0.8
N.D.
plant
Upstate
+0.2
-0.0
-0.5
-0.7
N.D.
carbon source
M9+sucrose
-0.1
-0.0
+0.4
-1.1
N.D.
plant
Atlantic
+0.1
-0.1
+0.1
-0.9
N.D.
plant
Norland
-0.1
-0.2
+0.1
-0.6
N.D.
control
LB
+0.0
-0.1
+0.4
-0.9
N.D.
plant
Norland
+0.1
+0.1
+0.1
-0.8
N.D.
control
LB
+0.1
+0.1
+0.3
-1.0
N.D.
control
LB
-0.3
+0.2
+0.5
-0.9
N.D.
control
PDB
-0.5
-0.1
-0.2
+0.3
N.D.
plant
Atlantic
-0.1
+0.3
-0.1
-0.4
N.D.
carbon source
M9+polygalacturonate
-0.4
-0.1
+0.2
+0.0
N.D.
plant
Norland
-0.1
+0.1
+0.7
-1.1
N.D.
plant
Norland
+0.0
-0.0
+0.6
-0.8
N.D.
control
PDB
-0.4
-0.1
-0.0
+0.4
N.D.
plant
Upstate
-0.1
+0.0
+0.7
-0.7
N.D.
plant
Atlantic
+0.0
+0.3
-0.3
+0.2
N.D.
control
PDB
-0.1
-0.1
+0.5
+0.2
N.D.
control
PDB
-0.6
-0.0
+0.4
+0.7
N.D.
plant
Upstate
-0.1
+0.1
+0.6
-0.0
N.D.
plant
Atlantic
-0.3
+0.2
+0.7
+0.0
N.D.
control
PDB
-0.3
+0.1
+0.2
+0.7
N.D.
control
PDB
-0.4
-0.1
+0.6
+0.8
N.D.
plant
Atlantic
+0.5
+0.3
+0.3
+0.1
N.D.
carbon source
M9+glycerol
-0.0
+0.1
+1.2
+0.0
N.D.
carbon source
M9+glycerol
+0.3
+0.1
+0.6
+0.4
N.D.
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