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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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500 nt
HGI48_RS04230 and HGI48_RS04235 are separated by 878 nucleotides
HGI48_RS04235 and HGI48_RS04240 are separated by 919 nucleotides
HGI48_RS04240 and HGI48_RS04245 are separated by 36 nucleotides
HGI48_RS04245 and HGI48_RS04250 are separated by 362 nucleotides
HGI48_RS04230: HGI48_RS04230 - dienelactone hydrolase family protein, at 890,083 to 891,261
_RS04230
HGI48_RS04235: HGI48_RS04235 - AlpA family transcriptional regulator, at 892,140 to 892,343
_RS04235
HGI48_RS04240: HGI48_RS04240 - hypothetical protein, at 893,263 to 893,640
_RS04240
HGI48_RS04245: HGI48_RS04245 - DUF4755 domain-containing protein, at 893,677 to 894,171
_RS04245
HGI48_RS04250: HGI48_RS04250 - MobA/MobL family protein, at 894,534 to 895,835
_RS04250
Group
Condition
HGI48
_RS04230
HGI48
_RS04235
HGI48
_RS04240
HGI48
_RS04245
HGI48
_RS04250
control
PDB
+0.1
N.D.
N.D.
-1.0
-0.4
control
PDB
+0.0
N.D.
N.D.
-1.0
-0.1
plant
Norland
+0.0
N.D.
N.D.
-1.0
+0.0
carbon source
M9+glycerol
+0.1
N.D.
N.D.
-1.2
+0.2
control
LB
-0.0
N.D.
N.D.
-0.8
-0.1
carbon source
M9+sucrose
-0.1
N.D.
N.D.
-1.2
+0.5
plant
Norland
-0.1
N.D.
N.D.
-0.6
-0.1
plant
Upstate
-0.2
N.D.
N.D.
-0.4
-0.0
control
LB
+0.1
N.D.
N.D.
-0.6
-0.0
control
LB
+0.1
N.D.
N.D.
-0.5
-0.2
control
PDB
-0.0
N.D.
N.D.
-0.3
-0.1
carbon source
M9+polygalacturonate
-0.1
N.D.
N.D.
-0.6
+0.2
carbon source
M9+glycerol
-0.0
N.D.
N.D.
-0.2
-0.2
plant
Atlantic
-0.2
N.D.
N.D.
-0.0
-0.2
plant
Norland
+0.1
N.D.
N.D.
-0.5
+0.0
carbon source
M9+glycerol
+0.2
N.D.
N.D.
-0.4
+0.0
carbon source
M9+polygalacturonate
+0.1
N.D.
N.D.
-0.5
+0.3
plant
Atlantic
-0.0
N.D.
N.D.
-0.2
+0.2
plant
Norland
+0.1
N.D.
N.D.
-0.5
+0.3
plant
Upstate
+0.1
N.D.
N.D.
-0.3
+0.2
control
LB
+0.1
N.D.
N.D.
-0.2
+0.2
plant
Norland
+0.2
N.D.
N.D.
-0.2
+0.2
carbon source
M9+glycerol
+0.2
N.D.
N.D.
-0.1
+0.2
carbon source
M9+sucrose
-0.2
N.D.
N.D.
+0.2
+0.3
carbon source
M9+polygalacturonate
-0.4
N.D.
N.D.
+0.9
-0.1
plant
Atlantic
+0.2
N.D.
N.D.
+0.3
-0.0
carbon source
M9+glycerol
+0.2
N.D.
N.D.
+0.2
+0.1
carbon source
M9+sucrose
-0.2
N.D.
N.D.
+0.4
+0.3
plant
Atlantic
+0.0
N.D.
N.D.
+0.6
+0.0
carbon source
M9+glycerol
+0.0
N.D.
N.D.
+0.3
+0.4
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