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Cofit
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04210 and HGI48_RS04215 overlap by 17 nucleotides
HGI48_RS04215 and HGI48_RS04220 are separated by 138 nucleotides
HGI48_RS04220 and HGI48_RS04225 are separated by 694 nucleotides
HGI48_RS04225 and HGI48_RS04230 are separated by 584 nucleotides
HGI48_RS04210: HGI48_RS04210 - type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein, at 886,768 to 887,313
_RS04210
HGI48_RS04215: HGI48_RS04215 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 887,297 to 888,214
_RS04215
HGI48_RS04220: HGI48_RS04220 - transposase, at 888,353 to 888,501
_RS04220
HGI48_RS04225: HGI48_RS04225 - hypothetical protein, at 889,196 to 889,498
_RS04225
HGI48_RS04230: HGI48_RS04230 - dienelactone hydrolase family protein, at 890,083 to 891,261
_RS04230
Group
Condition
HGI48
_RS04210
HGI48
_RS04215
HGI48
_RS04220
HGI48
_RS04225
HGI48
_RS04230
plant
Atlantic
-0.2
-0.4
-0.7
+0.0
+0.0
plant
Norland
+0.1
-0.1
-0.3
-1.0
+0.0
control
PDB
-0.0
-0.4
-0.1
-0.5
+0.0
plant
Atlantic
+0.0
-0.4
-1.0
+0.3
+0.0
plant
Norland
-0.0
-0.1
+0.0
-0.9
+0.2
plant
Norland
-0.0
+0.1
+0.0
-0.9
+0.1
carbon source
M9+polygalacturonate
-0.0
-0.1
+0.3
-0.5
-0.4
control
LB
+0.1
-0.0
-0.1
-0.7
+0.1
control
LB
+0.1
+0.0
-0.0
-0.7
+0.1
plant
Atlantic
+0.2
-0.0
-0.6
-0.4
+0.2
carbon source
M9+glycerol
+0.3
+0.2
+0.1
-1.2
+0.0
control
PDB
-0.0
-0.0
-0.0
-0.5
+0.0
control
PDB
+0.0
-0.2
-0.1
-0.2
-0.1
control
LB
+0.0
-0.0
-0.6
+0.1
-0.0
plant
Norland
-0.0
-0.1
+0.1
-0.4
-0.0
carbon source
M9+polygalacturonate
-0.2
+0.1
+0.2
-0.6
+0.1
plant
Atlantic
-0.0
-0.0
-0.3
+0.1
-0.2
carbon source
M9+glycerol
+0.0
-0.0
+0.1
-0.7
+0.2
carbon source
M9+sucrose
-0.1
-0.1
-0.5
+0.5
-0.2
plant
Upstate
-0.0
-0.1
+0.3
-0.6
+0.1
plant
Atlantic
-0.1
+0.2
+0.0
-0.3
-0.0
control
PDB
+0.2
+0.0
-0.6
+0.2
+0.0
plant
Norland
+0.0
+0.1
+0.0
-0.3
+0.1
plant
Atlantic
-0.3
-0.1
+0.4
+0.1
-0.0
control
PDB
+0.0
+0.0
-0.3
+0.4
+0.1
carbon source
M9+sucrose
-0.1
+0.1
+0.3
+0.1
-0.1
carbon source
M9+glycerol
+0.2
+0.4
+0.2
-0.4
+0.1
carbon source
M9+glycerol
+0.2
+0.2
+0.2
-0.2
+0.2
plant
Upstate
+0.1
+0.2
+0.1
+0.6
-0.2
carbon source
M9+polygalacturonate
+0.2
-0.1
+0.7
+0.4
-0.1
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