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Cofit
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04175 and HGI48_RS04180 are separated by 136 nucleotides
HGI48_RS04180 and HGI48_RS04185 are separated by 337 nucleotides
HGI48_RS04185 and HGI48_RS04190 are separated by 85 nucleotides
HGI48_RS04190 and HGI48_RS04195 are separated by 67 nucleotides
HGI48_RS04175: HGI48_RS04175 - TetR/AcrR family transcriptional regulator C-terminal domain-containing protein, at 881,929 to 882,609
_RS04175
HGI48_RS04180: HGI48_RS04180 - DUF1330 domain-containing protein, at 882,746 to 883,066
_RS04180
HGI48_RS04185: HGI48_RS04185 - transposase, at 883,404 to 883,700
_RS04185
HGI48_RS04190: HGI48_RS04190 - transposase, at 883,786 to 884,160
_RS04190
HGI48_RS04195: HGI48_RS04195 - AAA family ATPase, at 884,228 to 885,010
_RS04195
Group
Condition
HGI48
_RS04175
HGI48
_RS04180
HGI48
_RS04185
HGI48
_RS04190
HGI48
_RS04195
plant
Atlantic
-0.2
-0.5
+0.2
-1.0
N.D.
control
PDB
-0.7
-0.7
+0.0
-0.0
N.D.
control
PDB
-0.8
-0.3
+0.4
-0.4
N.D.
plant
Norland
-0.1
-0.8
+0.2
-0.2
N.D.
carbon source
M9+polygalacturonate
-0.5
-0.4
-0.3
+0.4
N.D.
control
PDB
-0.5
-0.3
+0.2
-0.2
N.D.
control
PDB
-0.4
-0.4
+0.3
-0.2
N.D.
control
LB
-0.3
-0.4
+0.4
-0.2
N.D.
control
PDB
-0.4
+0.3
+0.3
-0.6
N.D.
carbon source
M9+polygalacturonate
-0.6
-0.0
+0.1
+0.1
N.D.
control
LB
-0.0
-0.6
+0.1
+0.2
N.D.
control
LB
-0.3
-0.2
+0.3
-0.0
N.D.
plant
Norland
-0.1
-0.1
+0.3
-0.4
N.D.
control
PDB
-0.3
-0.2
+0.3
-0.0
N.D.
control
LB
-0.7
-0.0
+0.4
+0.2
N.D.
plant
Upstate
-0.0
+0.2
+0.1
-0.5
N.D.
plant
Norland
-0.3
-0.3
+0.3
+0.3
N.D.
carbon source
M9+glycerol
+0.2
-0.4
+0.1
+0.1
N.D.
plant
Norland
+0.1
-0.0
+0.3
-0.3
N.D.
plant
Atlantic
-0.3
+0.3
+0.1
+0.1
N.D.
plant
Atlantic
+0.0
-0.4
+0.6
-0.1
N.D.
plant
Upstate
-0.1
-0.3
+0.2
+0.3
N.D.
plant
Norland
+0.1
-0.2
+0.6
-0.1
N.D.
carbon source
M9+glycerol
-0.1
-0.1
+0.5
+0.2
N.D.
carbon source
M9+glycerol
+0.0
+0.5
+0.2
-0.3
N.D.
plant
Upstate
+0.2
+0.2
+0.4
-0.3
N.D.
plant
Upstate
-0.1
+0.1
+0.2
+0.5
N.D.
carbon source
M9+glycerol
+0.2
+0.1
+0.2
+0.3
N.D.
plant
Atlantic
-0.2
+0.1
+0.3
+0.5
N.D.
plant
Norland
-0.1
+0.1
+0.4
+0.4
N.D.
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