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Gene
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Cofit
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS04150 and HGI48_RS04155 are separated by 516 nucleotides
HGI48_RS04155 and HGI48_RS04160 are separated by 189 nucleotides
HGI48_RS04160 and HGI48_RS04165 are separated by 511 nucleotides
HGI48_RS04165 and HGI48_RS04170 overlap by 4 nucleotides
HGI48_RS04150: HGI48_RS04150 - alkene reductase, at 877,249 to 878,361
_RS04150
HGI48_RS04155: HGI48_RS04155 - TetR family transcriptional regulator, at 878,878 to 879,441
_RS04155
HGI48_RS04160: HGI48_RS04160 - transposase, at 879,631 to 879,894
_RS04160
HGI48_RS04165: HGI48_RS04165 - lipocalin-like domain-containing protein, at 880,406 to 880,882
_RS04165
HGI48_RS04170: HGI48_RS04170 - cupin domain-containing protein, at 880,879 to 881,415
_RS04170
Group
Condition
HGI48
_RS04150
HGI48
_RS04155
HGI48
_RS04160
HGI48
_RS04165
HGI48
_RS04170
plant
Atlantic
-0.4
-0.9
N.D.
-0.2
-0.2
carbon source
M9+polygalacturonate
-0.2
-0.7
N.D.
-0.1
-0.1
carbon source
M9+sucrose
+0.1
-0.5
N.D.
-0.2
-0.2
carbon source
M9+polygalacturonate
-0.0
-0.3
N.D.
-0.2
-0.3
carbon source
M9+sucrose
-0.0
-0.2
N.D.
-0.2
-0.4
carbon source
M9+polygalacturonate
+0.1
-0.6
N.D.
-0.0
-0.2
control
LB
-0.2
-0.1
N.D.
-0.2
-0.2
control
LB
-0.3
-0.3
N.D.
+0.1
-0.1
control
PDB
-0.4
-0.2
N.D.
+0.1
-0.0
control
LB
-0.2
-0.1
N.D.
-0.3
+0.0
carbon source
M9+glycerol
-0.2
-0.0
N.D.
-0.2
-0.1
control
PDB
-0.3
+0.2
N.D.
-0.4
-0.0
plant
Atlantic
-0.1
-0.3
N.D.
-0.0
-0.1
carbon source
M9+glycerol
-0.2
+0.2
N.D.
-0.4
-0.0
carbon source
M9+glycerol
-0.2
+0.2
N.D.
-0.4
+0.0
control
PDB
-0.2
+0.3
N.D.
-0.3
-0.0
plant
Norland
-0.2
-0.1
N.D.
-0.1
+0.1
control
PDB
-0.2
+0.2
N.D.
-0.1
-0.1
plant
Atlantic
-0.1
-0.1
N.D.
-0.1
+0.2
plant
Norland
-0.0
+0.0
N.D.
-0.2
+0.1
plant
Atlantic
+0.2
-0.0
N.D.
+0.0
-0.3
plant
Atlantic
-0.3
-0.2
N.D.
-0.1
+0.5
control
PDB
-0.1
+0.2
N.D.
-0.2
+0.0
carbon source
M9+glycerol
-0.3
+0.1
N.D.
+0.2
+0.3
plant
Upstate
-0.1
+0.1
N.D.
-0.0
+0.3
carbon source
M9+glycerol
-0.2
+0.4
N.D.
-0.1
+0.1
plant
Atlantic
+0.0
+0.1
N.D.
-0.2
+0.5
plant
Upstate
+0.2
-0.0
N.D.
-0.1
+0.3
carbon source
M9+sucrose
-0.0
+0.2
N.D.
-0.0
+0.3
plant
Norland
+0.1
-0.0
N.D.
+0.1
+0.3
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