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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS03945 and HGI48_RS03950 are separated by 25 nucleotides
HGI48_RS03950 and HGI48_RS03955 are separated by 57 nucleotides
HGI48_RS03955 and HGI48_RS03960 are separated by 14 nucleotides
HGI48_RS03960 and HGI48_RS03965 are separated by 58 nucleotides
HGI48_RS03945: HGI48_RS03945 - LysR family transcriptional regulator, at 837,328 to 838,272
_RS03945
HGI48_RS03950: HGI48_RS03950 - DUF2867 domain-containing protein, at 838,298 to 838,834
_RS03950
HGI48_RS03955: HGI48_RS03955 - arginase family protein, at 838,892 to 839,770
_RS03955
HGI48_RS03960: HGI48_RS03960 - alkene reductase, at 839,785 to 840,867
_RS03960
HGI48_RS03965: HGI48_RS03965 - MFS transporter, at 840,926 to 842,113
_RS03965
Group
Condition
HGI48
_RS03945
HGI48
_RS03950
HGI48
_RS03955
HGI48
_RS03960
HGI48
_RS03965
plant
Atlantic
-0.5
-0.9
-0.2
+0.0
-0.1
control
LB
-0.1
-0.3
-0.1
-0.2
-0.1
plant
Upstate
-0.2
-0.3
-0.2
-0.2
+0.2
plant
Upstate
-0.2
-0.2
-0.1
-0.3
+0.1
plant
Norland
-0.1
+0.0
-0.1
-0.2
-0.3
carbon source
M9+glycerol
+0.1
-0.3
-0.4
+0.3
-0.2
carbon source
M9+glycerol
+0.1
-0.2
-0.4
-0.0
+0.2
plant
Upstate
-0.1
+0.1
-0.0
-0.3
-0.1
control
PDB
+0.1
-0.3
-0.3
+0.3
+0.0
plant
Norland
+0.2
-0.3
-0.4
+0.0
+0.2
control
PDB
+0.0
-0.2
-0.5
+0.3
+0.1
carbon source
M9+glycerol
+0.2
-0.1
-0.4
+0.1
-0.0
carbon source
M9+glycerol
-0.2
+0.1
-0.1
-0.1
+0.2
control
LB
+0.2
-0.2
-0.1
-0.1
+0.2
control
LB
+0.2
-0.2
-0.1
-0.0
+0.1
control
LB
+0.1
-0.1
-0.2
+0.2
+0.2
plant
Norland
-0.1
-0.1
+0.2
+0.2
-0.1
plant
Upstate
+0.3
-0.1
-0.1
+0.2
-0.2
control
PDB
-0.1
-0.1
+0.1
+0.3
-0.0
plant
Atlantic
+0.1
-0.1
+0.1
+0.1
+0.1
carbon source
M9+polygalacturonate
+0.2
-0.0
+0.1
+0.2
-0.1
carbon source
M9+polygalacturonate
+0.5
+0.3
-0.4
+0.1
-0.0
plant
Norland
-0.1
+0.0
+0.1
+0.2
+0.3
plant
Atlantic
+0.0
-0.1
-0.3
+0.3
+0.5
carbon source
M9+sucrose
+0.5
+0.1
-0.0
+0.1
-0.2
carbon source
M9+polygalacturonate
+0.4
+0.1
+0.1
-0.1
+0.2
carbon source
M9+sucrose
+0.0
+0.3
-0.1
+0.4
+0.0
control
PDB
+0.4
+0.1
-0.2
+0.2
+0.2
carbon source
M9+sucrose
+0.2
+0.0
+0.1
+0.4
+0.2
plant
Atlantic
+0.2
+0.3
+0.5
+0.5
+0.1
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