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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS03780 and HGI48_RS03785 are separated by 268 nucleotides
HGI48_RS03785 and HGI48_RS03790 are separated by 115 nucleotides
HGI48_RS03790 and HGI48_RS03795 are separated by 145 nucleotides
HGI48_RS03795 and HGI48_RS03800 are separated by 126 nucleotides
HGI48_RS03780: HGI48_RS03780 - lytic murein transglycosylase B, at 806,449 to 807,552
_RS03780
HGI48_RS03785: HGI48_RS03785 - nucleoside recognition family protein, at 807,821 to 808,753
_RS03785
HGI48_RS03790: HGI48_RS03790 - helix-turn-helix domain-containing protein, at 808,869 to 809,903
_RS03790
HGI48_RS03795: HGI48_RS03795 - 4Fe-4S binding protein, at 810,049 to 810,918
_RS03795
HGI48_RS03800: HGI48_RS03800 - dimethyl sulfoxide reductase anchor subunit, at 811,045 to 811,875
_RS03800
Group
Condition
HGI48
_RS03780
HGI48
_RS03785
HGI48
_RS03790
HGI48
_RS03795
HGI48
_RS03800
control
PDB
-0.5
+0.2
-0.0
-0.4
-0.4
carbon source
M9+sucrose
+0.3
-0.2
-0.1
-0.1
-0.5
carbon source
M9+polygalacturonate
-0.1
+0.2
-0.1
-0.0
-0.4
plant
Atlantic
+0.2
-0.8
+0.2
+0.1
-0.2
control
PDB
+0.0
-0.3
-0.1
+0.2
-0.2
carbon source
M9+polygalacturonate
+0.4
+0.0
-0.3
-0.3
-0.2
control
PDB
+0.1
+0.3
+0.0
-0.2
-0.3
plant
Atlantic
-0.0
-0.2
+0.2
-0.4
+0.1
plant
Upstate
-0.1
-0.1
-0.2
-0.1
+0.3
control
PDB
+0.2
-0.1
+0.0
+0.3
-0.5
carbon source
M9+sucrose
+0.1
+0.3
+0.1
-0.4
+0.0
carbon source
M9+glycerol
-0.1
+0.2
-0.1
-0.1
+0.4
carbon source
M9+polygalacturonate
-0.2
+0.3
-0.0
+0.4
-0.3
plant
Atlantic
-0.0
-0.0
-0.1
+0.8
-0.4
plant
Upstate
+0.2
+0.2
+0.0
-0.1
+0.3
plant
Norland
+0.4
+0.0
-0.1
+0.3
+0.1
control
LB
+0.1
-0.0
-0.1
+0.3
+0.4
plant
Atlantic
+0.3
+0.2
-0.1
+0.5
-0.1
carbon source
M9+glycerol
-0.3
-0.0
+0.0
+0.8
+0.3
plant
Upstate
+0.3
-0.1
-0.0
+0.4
+0.2
plant
Norland
+0.3
+0.1
-0.1
+0.3
+0.3
carbon source
M9+glycerol
+0.2
-0.3
+0.1
+0.6
+0.4
carbon source
M9+glycerol
-0.0
-0.0
+0.0
+0.8
+0.2
plant
Norland
+0.1
-0.2
-0.1
+0.6
+0.5
plant
Norland
+0.2
-0.1
-0.2
+0.5
+0.5
plant
Norland
+0.2
+0.1
-0.0
+0.9
+0.0
plant
Upstate
+0.4
+0.2
+0.1
+0.3
+0.2
control
LB
+0.1
+0.2
+0.1
+0.5
+0.4
plant
Upstate
+0.3
-0.1
+0.0
+0.4
+0.7
plant
Atlantic
+0.5
+0.4
+0.2
+0.1
+0.2
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