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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS03740 and HGI48_RS03745 are separated by 164 nucleotides
HGI48_RS03745 and HGI48_RS03750 are separated by 56 nucleotides
HGI48_RS03750 and HGI48_RS03755 are separated by 16 nucleotides
HGI48_RS03755 and HGI48_RS03760 are separated by 17 nucleotides
HGI48_RS03740: HGI48_RS03740 - inositol 2-dehydrogenase, at 796,329 to 797,315
_RS03740
HGI48_RS03745: HGI48_RS03745 - substrate-binding domain-containing protein, at 797,480 to 798,418
_RS03745
HGI48_RS03750: HGI48_RS03750 - sugar ABC transporter ATP-binding protein, at 798,475 to 800,022
_RS03750
HGI48_RS03755: HGI48_RS03755 - ABC transporter permease, at 800,039 to 801,073
_RS03755
HGI48_RS03760: HGI48_RS03760 - Gfo/Idh/MocA family oxidoreductase, at 801,091 to 802,239
_RS03760
Group
Condition
HGI48
_RS03740
HGI48
_RS03745
HGI48
_RS03750
HGI48
_RS03755
HGI48
_RS03760
carbon source
M9+glycerol
+0.2
-0.1
-0.4
-0.3
-0.9
plant
Atlantic
-0.4
-0.2
-0.1
-0.4
-0.1
carbon source
M9+glycerol
-0.6
-0.2
+0.0
-0.2
-0.1
carbon source
M9+glycerol
-0.1
-0.2
-0.0
-0.3
-0.3
plant
Atlantic
-0.3
-0.3
+0.0
-0.1
-0.3
control
LB
-0.3
-0.1
+0.1
-0.3
-0.3
plant
Norland
-0.6
-0.2
-0.1
-0.2
+0.1
carbon source
M9+polygalacturonate
-0.3
-0.2
+0.1
-0.1
-0.3
carbon source
M9+sucrose
-0.7
+0.2
+0.1
-0.6
+0.1
plant
Upstate
-0.1
+0.0
-0.1
-0.3
-0.3
plant
Norland
-0.1
-0.2
+0.2
-0.0
-0.5
control
LB
-0.2
+0.0
+0.2
-0.1
-0.3
carbon source
M9+glycerol
-0.4
+0.1
+0.0
+0.0
-0.2
plant
Norland
+0.1
-0.3
+0.3
-0.2
-0.3
control
LB
-0.3
+0.1
+0.2
-0.0
-0.4
plant
Atlantic
+0.6
+0.0
+0.4
-0.6
-0.7
plant
Upstate
-0.1
+0.1
+0.1
-0.2
-0.3
plant
Norland
-0.0
-0.1
+0.3
-0.1
-0.3
carbon source
M9+sucrose
-0.3
-0.3
+0.4
+0.0
+0.1
plant
Norland
-0.0
+0.2
+0.1
-0.2
-0.2
plant
Upstate
+0.3
+0.3
+0.0
-0.3
-0.4
carbon source
M9+sucrose
-0.6
+0.0
+0.4
-0.0
+0.2
control
PDB
+0.1
+0.0
+0.3
-0.1
-0.3
control
PDB
+0.2
+0.1
+0.3
-0.1
-0.3
plant
Atlantic
-0.2
-0.0
+0.6
-0.2
+0.0
carbon source
M9+glycerol
+0.0
-0.1
+0.2
-0.1
+0.3
plant
Atlantic
+0.9
-0.3
-0.0
-0.0
-0.1
plant
Upstate
+0.5
-0.1
+0.2
+0.1
-0.2
control
PDB
-0.1
+0.4
+0.1
+0.3
-0.1
carbon source
M9+polygalacturonate
+0.7
+0.2
+0.1
+0.1
-0.3
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