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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS03585 and HGI48_RS03590 are separated by 648 nucleotides
HGI48_RS03590 and HGI48_RS03595 are separated by 853 nucleotides
HGI48_RS03595 and HGI48_RS03600 are separated by 80 nucleotides
HGI48_RS03600 and HGI48_RS03605 are separated by 88 nucleotides
HGI48_RS03585: HGI48_RS03585 - hypothetical protein, at 758,812 to 759,204
_RS03585
HGI48_RS03590: HGI48_RS03590 - hypothetical protein, at 759,853 to 760,047
_RS03590
HGI48_RS03595: HGI48_RS03595 - enolase, at 760,901 to 762,055
_RS03595
HGI48_RS03600: HGI48_RS03600 - ABC transporter substrate-binding protein, at 762,136 to 763,746
_RS03600
HGI48_RS03605: HGI48_RS03605 - ABC transporter permease, at 763,835 to 764,893
_RS03605
Group
Condition
HGI48
_RS03585
HGI48
_RS03590
HGI48
_RS03595
HGI48
_RS03600
HGI48
_RS03605
carbon source
M9+glycerol
-0.4
-0.9
N.D.
-0.2
+0.1
carbon source
M9+polygalacturonate
-1.3
-0.1
N.D.
-0.1
+0.0
carbon source
M9+glycerol
-0.9
-0.3
N.D.
-0.3
+0.0
carbon source
M9+sucrose
-0.9
-0.3
N.D.
-0.0
-0.1
carbon source
M9+glycerol
-0.2
-0.9
N.D.
-0.1
-0.2
carbon source
M9+polygalacturonate
-1.2
+0.2
N.D.
+0.1
-0.2
control
PDB
-0.8
-0.0
N.D.
+0.0
-0.2
control
PDB
-0.9
+0.4
N.D.
-0.4
+0.0
plant
Atlantic
-0.5
+0.0
N.D.
-0.2
-0.1
carbon source
M9+sucrose
-0.3
-0.0
N.D.
-0.3
-0.1
carbon source
M9+glycerol
-0.5
+0.3
N.D.
-0.5
+0.0
control
PDB
-0.3
+0.1
N.D.
-0.3
-0.1
carbon source
M9+polygalacturonate
-0.8
+0.3
N.D.
+0.1
-0.2
carbon source
M9+glycerol
-0.7
+0.1
N.D.
-0.1
+0.0
plant
Upstate
+0.3
-0.4
N.D.
-0.4
-0.1
plant
Upstate
-0.4
+0.1
N.D.
-0.2
-0.0
control
PDB
-0.3
+0.1
N.D.
-0.4
-0.0
control
PDB
-0.5
+0.0
N.D.
-0.2
+0.1
control
PDB
-0.1
+0.1
N.D.
-0.4
-0.2
control
LB
-0.5
+0.2
N.D.
-0.1
-0.0
plant
Norland
-0.2
+0.2
N.D.
-0.3
+0.0
plant
Atlantic
+0.3
-0.4
N.D.
+0.1
-0.2
plant
Upstate
+0.1
+0.2
N.D.
-0.5
-0.0
plant
Upstate
+0.1
+0.2
N.D.
-0.4
-0.1
plant
Atlantic
-0.3
+0.4
N.D.
-0.1
-0.1
plant
Atlantic
-0.0
+0.5
N.D.
-0.3
+0.1
plant
Norland
+0.4
+0.2
N.D.
-0.2
-0.2
plant
Atlantic
+0.2
+0.1
N.D.
-0.4
+0.4
plant
Upstate
+0.5
+0.4
N.D.
-0.1
-0.2
plant
Norland
+0.2
+0.7
N.D.
+0.0
-0.2
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