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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS03565 and HGI48_RS03570 are separated by 47 nucleotides
HGI48_RS03570 and HGI48_RS03575 overlap by 4 nucleotides
HGI48_RS03575 and HGI48_RS03580 are separated by 120 nucleotides
HGI48_RS03580 and HGI48_RS03585 are separated by 763 nucleotides
HGI48_RS03565: HGI48_RS03565 - Na+/H+ antiporter, at 752,306 to 753,952
_RS03565
HGI48_RS03570: HGI48_RS03570 - cation/acetate symporter ActP, at 754,000 to 755,658
_RS03570
HGI48_RS03575: HGI48_RS03575 - DUF485 domain-containing protein, at 755,655 to 755,966
_RS03575
HGI48_RS03580: HGI48_RS03580 - acetate--CoA ligase, at 756,087 to 758,048
_RS03580
HGI48_RS03585: HGI48_RS03585 - hypothetical protein, at 758,812 to 759,204
_RS03585
Group
Condition
HGI48
_RS03565
HGI48
_RS03570
HGI48
_RS03575
HGI48
_RS03580
HGI48
_RS03585
carbon source
M9+polygalacturonate
-0.2
+0.1
-0.6
+0.3
-1.2
carbon source
M9+glycerol
-0.2
-0.1
-0.0
-0.1
-0.5
plant
Atlantic
+0.1
-0.1
-0.4
-0.1
-0.5
carbon source
M9+glycerol
-0.2
-0.2
+0.2
-0.0
-0.7
carbon source
M9+glycerol
-0.2
+0.1
+0.1
+0.0
-0.9
carbon source
M9+polygalacturonate
-0.3
+0.2
-0.0
+0.6
-1.3
plant
Upstate
-0.2
-0.1
-0.0
+0.1
-0.4
control
LB
-0.2
-0.0
+0.0
-0.0
-0.4
control
LB
-0.1
+0.1
+0.0
-0.1
-0.5
control
PDB
-0.1
+0.1
+0.1
+0.1
-0.8
plant
Upstate
-0.3
-0.1
-0.3
-0.1
+0.1
carbon source
M9+glycerol
+0.1
-0.1
-0.2
-0.1
-0.2
carbon source
M9+polygalacturonate
-0.1
-0.0
-0.1
+0.6
-0.8
carbon source
M9+sucrose
-0.1
+0.2
+0.4
-0.0
-0.9
control
PDB
+0.0
+0.1
-0.3
+0.1
-0.3
carbon source
M9+sucrose
-0.3
+0.1
+0.2
-0.1
-0.3
control
PDB
+0.3
+0.1
+0.1
+0.0
-0.9
plant
Atlantic
+0.0
-0.2
+0.0
+0.1
-0.3
plant
Upstate
-0.1
-0.1
+0.1
-0.3
+0.1
control
LB
+0.1
+0.1
-0.2
-0.1
-0.1
plant
Norland
-0.2
+0.1
-0.1
-0.1
+0.1
plant
Norland
-0.1
-0.3
+0.2
-0.0
+0.0
carbon source
M9+glycerol
+0.2
+0.1
+0.1
-0.0
-0.4
plant
Atlantic
+0.4
+0.0
-0.3
-0.3
+0.3
control
PDB
+0.1
+0.0
+0.1
+0.1
-0.3
control
PDB
+0.3
+0.0
+0.2
+0.0
-0.5
plant
Norland
-0.1
-0.2
+0.2
+0.0
+0.4
plant
Upstate
-0.1
+0.0
+0.2
+0.0
+0.3
plant
Upstate
-0.4
+0.1
+0.1
+0.1
+0.5
plant
Atlantic
-0.0
+0.3
+0.3
+0.1
+0.2
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