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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS03385 and HGI48_RS03390 are separated by 814 nucleotides
HGI48_RS03390 and HGI48_RS03395 are separated by 30 nucleotides
HGI48_RS03395 and HGI48_RS03400 are separated by 131 nucleotides
HGI48_RS03400 and HGI48_RS03405 are separated by 79 nucleotides
HGI48_RS03385: HGI48_RS03385 - acetolactate synthase AlsS, at 709,496 to 711,175
_RS03385
HGI48_RS03390: HGI48_RS03390 - glycine cleavage system aminomethyltransferase GcvT, at 711,990 to 713,090
_RS03390
HGI48_RS03395: HGI48_RS03395 - glycine cleavage system protein GcvH, at 713,121 to 713,528
_RS03395
HGI48_RS03400: HGI48_RS03400 - aminomethyl-transferring glycine dehydrogenase, at 713,660 to 716,533
_RS03400
HGI48_RS03405: HGI48_RS03405 - HD domain-containing protein, at 716,613 to 717,221
_RS03405
Group
Condition
HGI48
_RS03385
HGI48
_RS03390
HGI48
_RS03395
HGI48
_RS03400
HGI48
_RS03405
carbon source
M9+polygalacturonate
-0.1
-0.6
-0.8
-0.1
-0.2
carbon source
M9+glycerol
-0.0
-0.8
-0.3
+0.1
-0.3
carbon source
M9+polygalacturonate
-0.1
-0.6
-0.3
-0.3
+0.4
plant
Norland
+0.0
-0.5
-0.0
+0.1
-0.3
plant
Atlantic
-0.2
-0.2
-0.3
-0.0
+0.1
carbon source
M9+sucrose
+0.1
-0.3
-0.6
-0.3
+0.5
carbon source
M9+glycerol
-0.0
-0.4
+0.3
-0.0
-0.3
plant
Upstate
-0.2
-0.4
+0.1
-0.1
+0.1
plant
Atlantic
+0.4
-0.6
-0.3
-0.3
+0.4
plant
Atlantic
-0.2
-0.3
+0.2
-0.1
+0.0
carbon source
M9+glycerol
+0.2
-0.3
+0.1
-0.0
-0.2
control
LB
-0.0
-0.2
+0.3
-0.1
-0.1
carbon source
M9+polygalacturonate
+0.0
-0.1
-0.4
-0.1
+0.4
plant
Atlantic
-0.0
-0.2
+0.1
-0.1
+0.1
carbon source
M9+sucrose
-0.0
-0.2
-0.0
-0.2
+0.4
control
LB
-0.1
-0.4
+0.3
-0.0
+0.2
control
LB
+0.1
-0.4
+0.2
+0.0
-0.0
plant
Upstate
+0.2
-0.0
-0.2
-0.0
+0.0
control
PDB
+0.1
-0.1
+0.0
+0.2
-0.2
carbon source
M9+glycerol
-0.0
-0.0
+0.4
-0.0
-0.4
carbon source
M9+glycerol
-0.1
-0.0
+0.3
-0.1
-0.1
control
PDB
-0.1
-0.3
+0.1
+0.1
+0.3
control
PDB
+0.0
-0.3
+0.1
+0.3
+0.1
plant
Norland
+0.1
-0.1
+0.2
-0.1
+0.2
carbon source
M9+glycerol
+0.0
-0.2
+0.3
-0.1
+0.3
plant
Upstate
+0.3
-0.2
+0.0
+0.1
+0.1
plant
Atlantic
+0.2
-0.5
+0.4
-0.1
+0.4
control
LB
-0.1
-0.1
+0.5
-0.1
+0.2
control
PDB
+0.1
+0.1
+0.2
+0.3
-0.0
control
PDB
-0.1
+0.1
+0.5
+0.1
+0.4
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