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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS03340 and HGI48_RS03345 are separated by 44 nucleotides
HGI48_RS03345 and HGI48_RS03350 are separated by 114 nucleotides
HGI48_RS03350 and HGI48_RS03355 are separated by 116 nucleotides
HGI48_RS03355 and HGI48_RS03360 are separated by 32 nucleotides
HGI48_RS03340: HGI48_RS03340 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 703,551 to 704,579
_RS03340
HGI48_RS03345: HGI48_RS03345 - aldo/keto reductase, at 704,624 to 705,619
_RS03345
HGI48_RS03350: HGI48_RS03350 - LysR family transcriptional regulator, at 705,734 to 706,636
_RS03350
HGI48_RS03355: HGI48_RS03355 - tRNA-Leu, at 706,753 to 706,838
_RS03355
HGI48_RS03360: HGI48_RS03360 - tRNA-Leu, at 706,871 to 706,956
_RS03360
Group
Condition
HGI48
_RS03340
HGI48
_RS03345
HGI48
_RS03350
HGI48
_RS03355
HGI48
_RS03360
plant
Atlantic
+0.3
-0.2
-0.5
N.D.
N.D.
plant
Atlantic
-0.6
+0.1
-0.0
N.D.
N.D.
carbon source
M9+glycerol
-0.1
+0.0
-0.3
N.D.
N.D.
plant
Atlantic
-0.1
+0.0
-0.3
N.D.
N.D.
plant
Atlantic
-0.2
+0.3
-0.3
N.D.
N.D.
control
PDB
-0.3
+0.2
-0.1
N.D.
N.D.
plant
Upstate
+0.3
-0.1
-0.3
N.D.
N.D.
control
LB
-0.1
+0.1
-0.1
N.D.
N.D.
plant
Norland
-0.1
+0.3
-0.3
N.D.
N.D.
plant
Upstate
-0.0
+0.2
-0.2
N.D.
N.D.
plant
Atlantic
+0.3
-0.0
-0.2
N.D.
N.D.
carbon source
M9+glycerol
+0.2
+0.1
-0.3
N.D.
N.D.
control
PDB
+0.3
+0.1
-0.2
N.D.
N.D.
control
PDB
+0.3
-0.1
-0.1
N.D.
N.D.
control
LB
+0.2
+0.1
-0.2
N.D.
N.D.
control
PDB
+0.2
-0.3
+0.2
N.D.
N.D.
carbon source
M9+polygalacturonate
+1.0
-0.5
-0.3
N.D.
N.D.
plant
Norland
+0.1
+0.3
-0.1
N.D.
N.D.
carbon source
M9+glycerol
+0.3
-0.1
+0.1
N.D.
N.D.
plant
Norland
+0.4
+0.1
-0.2
N.D.
N.D.
plant
Norland
+0.5
-0.2
+0.0
N.D.
N.D.
plant
Atlantic
+0.4
-0.2
+0.3
N.D.
N.D.
plant
Norland
+0.5
-0.1
+0.1
N.D.
N.D.
carbon source
M9+glycerol
+0.5
+0.3
-0.1
N.D.
N.D.
carbon source
M9+polygalacturonate
+1.0
-0.2
-0.1
N.D.
N.D.
carbon source
M9+sucrose
+1.0
+0.2
-0.4
N.D.
N.D.
carbon source
M9+sucrose
+1.3
-0.1
-0.2
N.D.
N.D.
carbon source
M9+sucrose
+0.8
+0.1
-0.0
N.D.
N.D.
control
PDB
+0.5
+0.4
-0.0
N.D.
N.D.
carbon source
M9+polygalacturonate
+1.2
-0.0
+0.0
N.D.
N.D.
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