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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS03295 and HGI48_RS03300 overlap by 7 nucleotides
HGI48_RS03300 and HGI48_RS03305 overlap by 14 nucleotides
HGI48_RS03305 and HGI48_RS03310 are separated by 283 nucleotides
HGI48_RS03310 and HGI48_RS03315 are separated by 62 nucleotides
HGI48_RS03295: HGI48_RS03295 - SCP2 domain-containing protein, at 696,581 to 697,105
_RS03295
HGI48_RS03300: HGI48_RS03300 - N-acetyltransferase, at 697,099 to 697,602
_RS03300
HGI48_RS03305: HGI48_RS03305 - GIY-YIG nuclease family protein, at 697,589 to 697,891
_RS03305
HGI48_RS03310: HGI48_RS03310 - deoxyribose-phosphate aldolase, at 698,175 to 698,954
_RS03310
HGI48_RS03315: HGI48_RS03315 - thymidine phosphorylase, at 699,017 to 700,348
_RS03315
Group
Condition
HGI48
_RS03295
HGI48
_RS03300
HGI48
_RS03305
HGI48
_RS03310
HGI48
_RS03315
carbon source
M9+polygalacturonate
+0.7
+0.4
-0.5
-1.2
-0.4
carbon source
M9+sucrose
+0.3
-0.0
+0.2
-0.4
-0.6
control
LB
-0.3
+0.0
+0.4
-0.4
+0.0
plant
Upstate
+0.8
+0.2
-0.7
-0.4
+0.0
carbon source
M9+sucrose
+0.4
+0.1
+0.2
-0.2
-0.6
carbon source
M9+glycerol
+0.3
+0.5
-0.8
+0.1
+0.1
control
PDB
+0.3
+0.6
-0.1
-0.5
-0.0
plant
Upstate
+0.3
+0.4
-0.2
-0.3
+0.2
plant
Atlantic
+0.8
+0.5
-0.3
-0.6
+0.1
plant
Upstate
+0.8
+0.2
-0.2
-0.2
-0.0
carbon source
M9+sucrose
+0.2
-0.0
+1.1
+0.0
-0.7
plant
Norland
+0.6
+0.4
-0.3
-0.3
+0.3
control
PDB
+0.3
+0.2
+0.4
-0.2
+0.0
plant
Atlantic
+0.4
+0.7
-0.2
+0.1
+0.1
plant
Upstate
+0.5
+0.6
-0.0
+0.0
-0.1
carbon source
M9+glycerol
+0.5
+0.9
-0.1
-0.4
+0.2
carbon source
M9+glycerol
+0.2
+0.7
-0.1
+0.2
+0.3
plant
Atlantic
+0.3
+0.7
-0.3
+0.4
+0.1
plant
Norland
+0.3
+0.6
+0.0
+0.2
+0.1
carbon source
M9+glycerol
+0.4
+1.0
+0.4
-0.5
-0.1
carbon source
M9+polygalacturonate
+0.8
+0.9
+0.1
+0.4
-0.8
plant
Atlantic
-0.6
+0.5
+0.5
+0.6
+0.3
plant
Norland
+0.6
+0.6
+0.2
+0.0
+0.0
plant
Atlantic
+0.6
+0.7
-0.0
-0.2
+0.4
plant
Norland
+0.5
+0.7
+0.7
-0.4
-0.1
carbon source
M9+polygalacturonate
+0.7
+1.0
+0.8
-0.4
-0.5
plant
Norland
+0.4
+1.2
-0.3
+0.2
+0.2
carbon source
M9+glycerol
+0.5
+0.4
+0.5
+0.2
+0.1
plant
Atlantic
+0.9
+0.5
+0.6
-0.1
+0.2
plant
Norland
+0.9
+0.9
+0.6
-0.1
+0.1
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