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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS03195 and HGI48_RS03200 are separated by 47 nucleotides
HGI48_RS03200 and HGI48_RS03205 are separated by 105 nucleotides
HGI48_RS03205 and HGI48_RS03210 are separated by 8 nucleotides
HGI48_RS03210 and HGI48_RS03215 are separated by 298 nucleotides
HGI48_RS03195: HGI48_RS03195 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 675,153 to 675,782
_RS03195
HGI48_RS03200: HGI48_RS03200 - ATP-dependent zinc metalloprotease FtsH, at 675,830 to 677,782
_RS03200
HGI48_RS03205: HGI48_RS03205 - dihydropteroate synthase, at 677,888 to 678,721
_RS03205
HGI48_RS03210: HGI48_RS03210 - phosphoglucosamine mutase, at 678,730 to 680,067
_RS03210
HGI48_RS03215: HGI48_RS03215 - preprotein translocase subunit SecG, at 680,366 to 680,701
_RS03215
Group
Condition
HGI48
_RS03195
HGI48
_RS03200
HGI48
_RS03205
HGI48
_RS03210
HGI48
_RS03215
plant
Atlantic
N.D.
N.D.
N.D.
N.D.
-4.6
plant
Atlantic
N.D.
N.D.
N.D.
N.D.
-2.3
plant
Norland
N.D.
N.D.
N.D.
N.D.
-1.6
plant
Norland
N.D.
N.D.
N.D.
N.D.
-1.2
carbon source
M9+glycerol
N.D.
N.D.
N.D.
N.D.
-1.0
plant
Upstate
N.D.
N.D.
N.D.
N.D.
-1.0
carbon source
M9+glycerol
N.D.
N.D.
N.D.
N.D.
-1.0
plant
Upstate
N.D.
N.D.
N.D.
N.D.
-0.9
plant
Upstate
N.D.
N.D.
N.D.
N.D.
-0.9
control
PDB
N.D.
N.D.
N.D.
N.D.
-0.8
carbon source
M9+glycerol
N.D.
N.D.
N.D.
N.D.
-0.8
plant
Upstate
N.D.
N.D.
N.D.
N.D.
-0.7
control
LB
N.D.
N.D.
N.D.
N.D.
-0.6
carbon source
M9+glycerol
N.D.
N.D.
N.D.
N.D.
-0.5
plant
Norland
N.D.
N.D.
N.D.
N.D.
-0.4
plant
Norland
N.D.
N.D.
N.D.
N.D.
-0.4
plant
Norland
N.D.
N.D.
N.D.
N.D.
-0.4
plant
Upstate
N.D.
N.D.
N.D.
N.D.
-0.4
plant
Atlantic
N.D.
N.D.
N.D.
N.D.
-0.4
control
PDB
N.D.
N.D.
N.D.
N.D.
-0.3
control
LB
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
M9+polygalacturonate
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
M9+glycerol
N.D.
N.D.
N.D.
N.D.
-0.3
control
LB
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
M9+polygalacturonate
N.D.
N.D.
N.D.
N.D.
+0.2
control
PDB
N.D.
N.D.
N.D.
N.D.
+0.3
control
LB
N.D.
N.D.
N.D.
N.D.
+0.5
carbon source
M9+polygalacturonate
N.D.
N.D.
N.D.
N.D.
+0.6
plant
Atlantic
N.D.
N.D.
N.D.
N.D.
+0.6
plant
Atlantic
N.D.
N.D.
N.D.
N.D.
+1.1
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