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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS03155 and HGI48_RS03160 are separated by 260 nucleotides
HGI48_RS03160 and HGI48_RS03165 are separated by 19 nucleotides
HGI48_RS03165 and HGI48_RS03170 are separated by 103 nucleotides
HGI48_RS03170 and HGI48_RS03175 are separated by 266 nucleotides
HGI48_RS03155: HGI48_RS03155 - octaprenyl diphosphate synthase, at 667,989 to 668,960
_RS03155
HGI48_RS03160: HGI48_RS03160 - 50S ribosomal protein L21, at 669,221 to 669,532
_RS03160
HGI48_RS03165: HGI48_RS03165 - 50S ribosomal protein L27, at 669,552 to 669,809
_RS03165
HGI48_RS03170: HGI48_RS03170 - DMT family transporter, at 669,913 to 670,857
_RS03170
HGI48_RS03175: HGI48_RS03175 - Obg family GTPase CgtA, at 671,124 to 672,299
_RS03175
Group
Condition
HGI48
_RS03155
HGI48
_RS03160
HGI48
_RS03165
HGI48
_RS03170
HGI48
_RS03175
control
PDB
N.D.
N.D.
N.D.
-0.3
N.D.
control
PDB
N.D.
N.D.
N.D.
-0.3
N.D.
plant
Atlantic
N.D.
N.D.
N.D.
-0.2
N.D.
carbon source
M9+sucrose
N.D.
N.D.
N.D.
-0.2
N.D.
plant
Upstate
N.D.
N.D.
N.D.
-0.2
N.D.
plant
Upstate
N.D.
N.D.
N.D.
-0.2
N.D.
carbon source
M9+sucrose
N.D.
N.D.
N.D.
-0.2
N.D.
control
LB
N.D.
N.D.
N.D.
-0.2
N.D.
plant
Atlantic
N.D.
N.D.
N.D.
-0.1
N.D.
carbon source
M9+glycerol
N.D.
N.D.
N.D.
-0.1
N.D.
control
PDB
N.D.
N.D.
N.D.
-0.1
N.D.
control
PDB
N.D.
N.D.
N.D.
-0.1
N.D.
control
PDB
N.D.
N.D.
N.D.
-0.1
N.D.
plant
Norland
N.D.
N.D.
N.D.
-0.1
N.D.
plant
Norland
N.D.
N.D.
N.D.
-0.1
N.D.
control
LB
N.D.
N.D.
N.D.
-0.1
N.D.
carbon source
M9+polygalacturonate
N.D.
N.D.
N.D.
-0.1
N.D.
carbon source
M9+sucrose
N.D.
N.D.
N.D.
-0.1
N.D.
control
LB
N.D.
N.D.
N.D.
-0.1
N.D.
carbon source
M9+polygalacturonate
N.D.
N.D.
N.D.
-0.0
N.D.
plant
Upstate
N.D.
N.D.
N.D.
+0.1
N.D.
plant
Norland
N.D.
N.D.
N.D.
+0.1
N.D.
carbon source
M9+polygalacturonate
N.D.
N.D.
N.D.
+0.1
N.D.
plant
Upstate
N.D.
N.D.
N.D.
+0.1
N.D.
carbon source
M9+glycerol
N.D.
N.D.
N.D.
+0.1
N.D.
plant
Norland
N.D.
N.D.
N.D.
+0.1
N.D.
plant
Norland
N.D.
N.D.
N.D.
+0.1
N.D.
plant
Atlantic
N.D.
N.D.
N.D.
+0.1
N.D.
carbon source
M9+glycerol
N.D.
N.D.
N.D.
+0.2
N.D.
plant
Atlantic
N.D.
N.D.
N.D.
+0.4
N.D.
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