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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS03005 and HGI48_RS03010 overlap by 14 nucleotides
HGI48_RS03010 and HGI48_RS03015 overlap by 4 nucleotides
HGI48_RS03015 and HGI48_RS03020 are separated by 77 nucleotides
HGI48_RS03020 and HGI48_RS03025 overlap by 8 nucleotides
HGI48_RS03005: HGI48_RS03005 - phage holin family protein, at 644,208 to 644,504
_RS03005
HGI48_RS03010: HGI48_RS03010 - glycoside hydrolase family 104 protein, at 644,491 to 644,982
_RS03010
HGI48_RS03015: HGI48_RS03015 - LysB family phage lysis regulatory protein, at 644,979 to 645,428
_RS03015
HGI48_RS03020: HGI48_RS03020 - phage tail protein, at 645,506 to 645,937
_RS03020
HGI48_RS03025: HGI48_RS03025 - phage virion morphogenesis protein, at 645,930 to 646,373
_RS03025
Group
Condition
HGI48
_RS03005
HGI48
_RS03010
HGI48
_RS03015
HGI48
_RS03020
HGI48
_RS03025
plant
Atlantic
N.D.
-0.1
-0.5
-1.1
-0.5
plant
Norland
N.D.
-0.1
-0.3
-0.8
-0.4
carbon source
M9+glycerol
N.D.
+0.2
-1.0
-0.0
-0.6
plant
Upstate
N.D.
-0.2
-0.3
-0.5
-0.3
plant
Atlantic
N.D.
+0.3
-0.6
-0.8
-0.2
carbon source
M9+glycerol
N.D.
-0.6
+0.4
-0.4
-0.4
control
LB
N.D.
+0.3
-0.3
-0.5
-0.4
control
LB
N.D.
+0.2
-0.3
-0.3
-0.4
carbon source
M9+polygalacturonate
N.D.
+0.2
-0.1
-0.6
-0.1
carbon source
M9+glycerol
N.D.
+0.1
-0.2
-0.1
-0.4
carbon source
M9+glycerol
N.D.
+0.3
-0.4
+0.1
-0.5
control
PDB
N.D.
+0.2
+0.1
-0.4
-0.3
control
LB
N.D.
+0.2
+0.0
-0.4
-0.1
plant
Upstate
N.D.
-0.3
+0.3
-0.2
-0.1
plant
Norland
N.D.
+0.3
-0.2
-0.5
+0.2
plant
Norland
N.D.
+0.2
+0.2
-0.1
-0.4
plant
Upstate
N.D.
-0.1
+0.1
+0.6
-0.6
carbon source
M9+glycerol
N.D.
+0.4
+0.3
-0.3
-0.3
control
PDB
N.D.
+0.6
+0.0
-0.4
-0.1
plant
Atlantic
N.D.
+0.2
+0.5
-0.5
-0.1
carbon source
M9+sucrose
N.D.
+0.3
+0.3
-0.3
-0.1
plant
Norland
N.D.
+0.6
+0.1
-0.1
-0.5
control
PDB
N.D.
+0.3
+0.2
+0.3
-0.5
plant
Atlantic
N.D.
-0.3
-0.1
+0.7
+0.1
control
PDB
N.D.
+0.5
+0.0
+0.1
-0.1
plant
Atlantic
N.D.
+0.3
-0.2
+0.3
+0.2
control
PDB
N.D.
+0.5
+0.1
+0.0
+0.0
plant
Atlantic
N.D.
+0.3
-0.2
+0.2
+0.4
carbon source
M9+polygalacturonate
N.D.
+0.3
+0.5
-0.1
+0.0
plant
Norland
N.D.
+0.3
+0.1
+0.4
-0.1
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