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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS02495 and HGI48_RS02500 are separated by 17 nucleotides
HGI48_RS02500 and HGI48_RS02505 are separated by 108 nucleotides
HGI48_RS02505 and HGI48_RS02510 are separated by 79 nucleotides
HGI48_RS02510 and HGI48_RS02515 are separated by 163 nucleotides
HGI48_RS02495: HGI48_RS02495 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 538,677 to 539,711
_RS02495
HGI48_RS02500: HGI48_RS02500 - oxidoreductase, at 539,729 to 540,751
_RS02500
HGI48_RS02505: HGI48_RS02505 - FAD-dependent urate hydroxylase HpxO, at 540,860 to 542,014
_RS02505
HGI48_RS02510: HGI48_RS02510 - GntR family transcriptional regulator, at 542,094 to 542,792
_RS02510
HGI48_RS02515: HGI48_RS02515 - DUF2848 domain-containing protein, at 542,956 to 543,648
_RS02515
Group
Condition
HGI48
_RS02495
HGI48
_RS02500
HGI48
_RS02505
HGI48
_RS02510
HGI48
_RS02515
plant
Upstate
-0.9
+0.2
-0.2
-0.2
+0.0
carbon source
M9+sucrose
+0.2
-0.0
-0.4
-0.5
+0.2
plant
Atlantic
+0.0
+0.1
+0.2
-0.7
-0.0
plant
Norland
+0.1
-0.2
+0.0
-0.3
-0.0
carbon source
M9+polygalacturonate
+0.2
-0.5
-0.1
-0.3
+0.3
plant
Norland
+0.1
-0.2
-0.1
-0.1
-0.1
control
LB
-0.1
+0.4
-0.4
-0.3
+0.0
carbon source
M9+glycerol
+0.3
-0.1
+0.0
-0.5
+0.1
control
LB
+0.1
-0.0
-0.2
-0.3
+0.2
plant
Upstate
-0.0
+0.2
-0.2
-0.2
+0.1
plant
Upstate
-0.1
+0.2
-0.2
-0.2
+0.3
carbon source
M9+sucrose
+0.1
+0.2
-0.2
+0.2
-0.4
carbon source
M9+glycerol
+0.4
-0.2
-0.1
-0.1
-0.0
carbon source
M9+glycerol
+0.5
+0.0
-0.3
-0.2
+0.0
plant
Upstate
+0.2
-0.0
-0.3
-0.0
+0.2
carbon source
M9+glycerol
+0.1
+0.1
-0.3
-0.0
+0.1
plant
Norland
-0.1
+0.2
-0.0
-0.1
+0.2
control
PDB
-0.1
+0.5
-0.0
-0.2
+0.1
control
PDB
+0.5
+0.1
+0.1
-0.3
-0.1
plant
Upstate
-0.2
+0.1
+0.2
-0.0
+0.2
control
PDB
+0.2
+0.2
-0.2
+0.4
-0.0
plant
Atlantic
+0.5
-0.2
-0.1
+0.1
+0.4
plant
Norland
+0.7
+0.1
-0.3
-0.0
+0.1
control
PDB
+0.3
-0.0
-0.2
+0.4
+0.2
carbon source
M9+glycerol
+0.1
+0.3
+0.0
+0.2
+0.2
control
PDB
+0.5
+0.0
-0.0
+0.0
+0.2
plant
Atlantic
+1.1
+0.1
-0.0
-0.7
+0.3
carbon source
M9+polygalacturonate
+0.4
+0.1
+0.3
+0.2
-0.0
plant
Atlantic
+0.2
+0.6
-0.2
+0.3
+0.1
plant
Atlantic
+0.4
+0.7
+0.5
+0.3
+0.2
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