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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS02455 and HGI48_RS02460 are separated by 104 nucleotides
HGI48_RS02460 and HGI48_RS02465 are separated by 73 nucleotides
HGI48_RS02465 and HGI48_RS02470 are separated by 175 nucleotides
HGI48_RS02470 and HGI48_RS02475 are separated by 230 nucleotides
HGI48_RS02455: HGI48_RS02455 - iron ABC transporter permease, at 531,264 to 532,262
_RS02455
HGI48_RS02460: HGI48_RS02460 - alkyl hydroperoxide reductase subunit C, at 532,367 to 532,930
_RS02460
HGI48_RS02465: HGI48_RS02465 - alkyl hydroperoxide reductase subunit F, at 533,004 to 534,566
_RS02465
HGI48_RS02470: HGI48_RS02470 - DUF1868 domain-containing protein, at 534,742 to 535,572
_RS02470
HGI48_RS02475: HGI48_RS02475 - acetyltransferase, at 535,803 to 536,483
_RS02475
Group
Condition
HGI48
_RS02455
HGI48
_RS02460
HGI48
_RS02465
HGI48
_RS02470
HGI48
_RS02475
plant
Norland
-0.6
-0.1
-0.1
+0.1
-0.0
control
PDB
-0.3
-0.3
-0.1
+0.1
+0.0
control
PDB
-0.1
-0.7
-0.0
+0.0
+0.1
carbon source
M9+glycerol
-0.1
-0.3
+0.1
+0.2
-0.5
plant
Upstate
-0.3
-0.1
-0.4
+0.2
+0.1
plant
Atlantic
+0.1
-1.0
+0.2
+0.3
+0.0
plant
Norland
-0.2
-0.3
+0.1
+0.1
+0.0
carbon source
M9+glycerol
+0.4
-0.4
+0.0
+0.1
-0.2
carbon source
M9+glycerol
+0.2
-0.2
+0.1
+0.1
-0.2
control
LB
+0.1
-0.4
+0.1
+0.2
-0.0
control
LB
+0.3
-0.3
-0.1
+0.2
-0.1
plant
Norland
-0.2
-0.2
+0.1
+0.1
+0.2
plant
Atlantic
-0.4
-0.3
+0.5
+0.3
-0.1
carbon source
M9+sucrose
-0.2
+0.1
-0.1
+0.1
+0.2
plant
Atlantic
+0.3
-0.3
+0.3
-0.0
-0.1
control
PDB
-0.4
-0.3
+0.3
+0.1
+0.5
plant
Upstate
+0.6
-0.4
-0.1
+0.0
+0.1
control
LB
-0.0
-0.2
+0.2
+0.1
+0.2
carbon source
M9+polygalacturonate
-0.7
+0.2
+0.2
+0.5
+0.1
control
PDB
+0.4
-0.3
+0.1
+0.1
+0.0
control
LB
+0.3
-0.1
+0.2
+0.1
-0.0
control
PDB
+0.4
-0.2
+0.2
-0.0
+0.3
plant
Upstate
-0.3
+0.4
+0.2
+0.1
+0.2
carbon source
M9+sucrose
+0.5
-0.1
+0.1
+0.2
+0.0
control
PDB
+0.1
-0.1
+0.2
+0.2
+0.3
carbon source
M9+sucrose
-0.1
+0.4
+0.2
+0.4
-0.2
plant
Atlantic
+0.6
+0.3
-0.0
-0.2
+0.0
carbon source
M9+glycerol
+0.7
+0.0
-0.2
+0.2
+0.1
carbon source
M9+glycerol
+0.9
-0.0
-0.0
+0.3
-0.1
carbon source
M9+polygalacturonate
-0.0
+0.4
+0.1
+0.3
+0.4
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