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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS02380 and HGI48_RS02385 are separated by 80 nucleotides
HGI48_RS02385 and HGI48_RS02390 are separated by 129 nucleotides
HGI48_RS02390 and HGI48_RS02395 are separated by 15 nucleotides
HGI48_RS02395 and HGI48_RS02400 are separated by 376 nucleotides
HGI48_RS02380: HGI48_RS02380 - DNA repair protein RadA, at 515,531 to 516,916
_RS02380
HGI48_RS02385: HGI48_RS02385 - phosphoserine phosphatase, at 516,997 to 517,974
_RS02385
HGI48_RS02390: HGI48_RS02390 - YtjB family periplasmic protein, at 518,104 to 518,784
_RS02390
HGI48_RS02395: HGI48_RS02395 - trans-aconitate 2-methyltransferase, at 518,800 to 519,576
_RS02395
HGI48_RS02400: HGI48_RS02400 - peptide chain release factor 3, at 519,953 to 521,542
_RS02400
Group
Condition
HGI48
_RS02380
HGI48
_RS02385
HGI48
_RS02390
HGI48
_RS02395
HGI48
_RS02400
carbon source
M9+polygalacturonate
-0.1
-2.2
-0.0
+0.1
N.D.
plant
Upstate
-0.5
-1.7
+0.0
-0.1
N.D.
plant
Norland
-0.7
-1.8
+0.2
-0.0
N.D.
carbon source
M9+polygalacturonate
+0.0
-2.1
-0.4
+0.3
N.D.
plant
Norland
-0.4
-1.8
-0.0
-0.1
N.D.
plant
Upstate
-0.5
-1.6
-0.0
-0.0
N.D.
plant
Atlantic
-0.4
-1.6
+0.0
+0.1
N.D.
plant
Upstate
+0.1
-1.9
+0.3
-0.3
N.D.
carbon source
M9+sucrose
-0.3
-1.5
-0.1
+0.1
N.D.
carbon source
M9+sucrose
-0.4
-1.4
+0.1
-0.2
N.D.
plant
Atlantic
+1.0
-1.8
-0.5
-0.4
N.D.
plant
Norland
-0.3
-1.6
+0.3
+0.3
N.D.
carbon source
M9+sucrose
-0.3
-1.6
+0.2
+0.3
N.D.
plant
Norland
+0.1
-1.4
-0.0
+0.0
N.D.
plant
Norland
-0.1
-1.4
+0.2
+0.1
N.D.
plant
Atlantic
+0.3
-1.5
+0.6
-0.5
N.D.
carbon source
M9+polygalacturonate
+0.5
-1.5
+0.1
-0.2
N.D.
plant
Upstate
-0.2
-1.6
+0.4
+0.3
N.D.
carbon source
M9+glycerol
-0.5
-1.3
+0.5
+0.2
N.D.
plant
Atlantic
+0.0
-1.2
+0.3
-0.1
N.D.
carbon source
M9+glycerol
-0.2
-0.9
+0.4
-0.0
N.D.
plant
Atlantic
+0.6
-1.8
+0.5
+0.1
N.D.
plant
Norland
+0.2
-1.3
+0.3
+0.2
N.D.
plant
Atlantic
-0.5
-0.9
+0.7
+0.1
N.D.
plant
Upstate
+0.5
-1.7
+0.4
+0.3
N.D.
carbon source
M9+glycerol
-0.2
-1.1
+0.5
+0.3
N.D.
carbon source
M9+glycerol
+0.3
-1.3
+0.7
+0.2
N.D.
carbon source
M9+glycerol
+0.3
-1.0
+0.7
+0.2
N.D.
control
PDB
+0.2
-0.5
+0.6
+0.1
N.D.
control
PDB
+0.3
-0.3
+0.6
-0.1
N.D.
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