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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS02325 and HGI48_RS02330 are separated by 53 nucleotides
HGI48_RS02330 and HGI48_RS02335 are separated by 716 nucleotides
HGI48_RS02335 and HGI48_RS02340 are separated by 494 nucleotides
HGI48_RS02340 and HGI48_RS02345 are separated by 21 nucleotides
HGI48_RS02325: HGI48_RS02325 - LysE family translocator, at 505,141 to 505,776
_RS02325
HGI48_RS02330: HGI48_RS02330 - hypothetical protein, at 505,830 to 506,558
_RS02330
HGI48_RS02335: HGI48_RS02335 - DUF1440 domain-containing protein, at 507,275 to 507,817
_RS02335
HGI48_RS02340: HGI48_RS02340 - FAD-dependent 2-octaprenylphenol hydroxylase, at 508,312 to 509,523
_RS02340
HGI48_RS02345: HGI48_RS02345 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 509,545 to 510,723
_RS02345
Group
Condition
HGI48
_RS02325
HGI48
_RS02330
HGI48
_RS02335
HGI48
_RS02340
HGI48
_RS02345
carbon source
M9+polygalacturonate
-0.7
-1.0
-0.3
N.D.
N.D.
carbon source
M9+sucrose
-0.4
-0.9
+0.0
N.D.
N.D.
control
PDB
-0.1
-0.7
-0.5
N.D.
N.D.
plant
Atlantic
-0.3
-0.4
-0.3
N.D.
N.D.
plant
Norland
-0.3
-0.5
-0.0
N.D.
N.D.
plant
Atlantic
+0.3
-0.5
-0.5
N.D.
N.D.
plant
Atlantic
+0.6
-0.9
-0.3
N.D.
N.D.
control
PDB
-0.1
-0.3
-0.3
N.D.
N.D.
control
PDB
+0.2
-0.6
-0.1
N.D.
N.D.
plant
Upstate
-0.4
-0.2
+0.0
N.D.
N.D.
control
PDB
+0.1
-0.5
-0.1
N.D.
N.D.
carbon source
M9+polygalacturonate
-0.2
-0.3
+0.0
N.D.
N.D.
carbon source
M9+sucrose
-0.4
-0.1
+0.2
N.D.
N.D.
plant
Norland
+0.3
-0.5
-0.2
N.D.
N.D.
plant
Norland
+0.2
-0.1
-0.4
N.D.
N.D.
control
LB
-0.1
-0.3
+0.1
N.D.
N.D.
control
PDB
+0.3
-0.2
-0.4
N.D.
N.D.
plant
Atlantic
+0.2
-0.7
+0.2
N.D.
N.D.
carbon source
M9+glycerol
-0.0
+0.3
-0.3
N.D.
N.D.
carbon source
M9+glycerol
-0.1
+0.3
-0.2
N.D.
N.D.
plant
Norland
+0.3
-0.2
-0.0
N.D.
N.D.
plant
Norland
-0.2
+0.3
-0.0
N.D.
N.D.
control
PDB
+0.4
-0.3
-0.0
N.D.
N.D.
carbon source
M9+glycerol
+0.3
-0.1
-0.1
N.D.
N.D.
plant
Atlantic
+0.8
-0.1
-0.5
N.D.
N.D.
plant
Upstate
+0.5
-0.3
-0.0
N.D.
N.D.
plant
Upstate
+0.3
+0.3
-0.2
N.D.
N.D.
carbon source
M9+sucrose
+0.1
-0.0
+0.3
N.D.
N.D.
plant
Upstate
+0.4
-0.3
+0.3
N.D.
N.D.
carbon source
M9+glycerol
+0.5
+0.2
-0.3
N.D.
N.D.
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