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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS01905 and HGI48_RS01910 are separated by 223 nucleotides
HGI48_RS01910 and HGI48_RS01915 are separated by 119 nucleotides
HGI48_RS01915 and HGI48_RS01920 are separated by 162 nucleotides
HGI48_RS01920 and HGI48_RS01925 are separated by 89 nucleotides
HGI48_RS01905: HGI48_RS01905 - YhcH/YjgK/YiaL family protein, at 421,714 to 422,181
_RS01905
HGI48_RS01910: HGI48_RS01910 - 6-phospho-beta-glucosidase, at 422,405 to 423,841
_RS01910
HGI48_RS01915: HGI48_RS01915 - ornithine carbamoyltransferase, at 423,961 to 424,977
_RS01915
HGI48_RS01920: HGI48_RS01920 - ribonuclease E inhibitor RraB, at 425,140 to 425,568
_RS01920
HGI48_RS01925: HGI48_RS01925 - GNAT family N-acetyltransferase, at 425,658 to 426,161
_RS01925
Group
Condition
HGI48
_RS01905
HGI48
_RS01910
HGI48
_RS01915
HGI48
_RS01920
HGI48
_RS01925
carbon source
M9+sucrose
-0.1
-0.1
-2.6
-0.4
-1.1
carbon source
M9+polygalacturonate
-0.1
-0.0
-3.0
+0.1
-0.1
carbon source
M9+sucrose
-0.1
+0.1
-2.3
-0.5
-0.5
carbon source
M9+polygalacturonate
-0.1
+0.0
-2.4
-0.2
-0.5
carbon source
M9+sucrose
+0.3
-0.0
-2.7
-0.2
-0.0
carbon source
M9+polygalacturonate
+0.1
-0.1
-2.5
-0.0
+0.2
carbon source
M9+glycerol
+0.2
-0.0
-2.4
+0.4
+0.1
carbon source
M9+glycerol
+0.1
-0.0
-1.5
+0.3
-0.2
carbon source
M9+glycerol
-0.1
+0.2
-1.6
-0.1
+0.2
carbon source
M9+glycerol
+0.2
-0.1
-1.4
+0.1
-0.0
carbon source
M9+glycerol
+0.1
+0.2
-1.4
+0.1
-0.2
carbon source
M9+glycerol
+0.3
+0.1
-1.5
-0.1
+0.1
plant
Norland
+0.1
+0.1
-0.2
-0.5
-0.3
plant
Atlantic
-0.1
+0.0
-0.2
+0.3
-0.8
plant
Atlantic
+0.1
-0.3
-0.3
+0.2
-0.2
plant
Upstate
-0.4
+0.2
-0.0
-0.2
+0.0
plant
Atlantic
-0.2
+0.2
+0.2
-0.1
-0.3
plant
Atlantic
+0.1
-0.3
-0.1
-0.1
+0.2
control
LB
+0.2
+0.1
-0.1
-0.1
-0.2
plant
Norland
-0.2
+0.1
-0.2
+0.2
+0.1
plant
Upstate
+0.2
+0.2
-0.2
+0.1
-0.1
plant
Norland
+0.2
+0.1
-0.2
+0.3
-0.2
plant
Norland
+0.2
-0.1
-0.1
+0.3
-0.1
plant
Atlantic
+0.4
+0.3
-0.4
+0.0
+0.2
control
PDB
+0.2
+0.0
+0.4
+0.1
-0.2
plant
Upstate
+0.1
+0.0
-0.1
+0.2
+0.3
control
PDB
+0.2
+0.1
+0.3
+0.3
-0.1
control
PDB
+0.2
+0.2
+0.2
+0.3
+0.1
control
PDB
+0.2
+0.1
+0.2
+0.3
+0.3
plant
Upstate
+0.2
+0.4
+0.3
+0.2
+0.4
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