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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS01895 and HGI48_RS01900 are separated by 16 nucleotides
HGI48_RS01900 and HGI48_RS01905 are separated by 411 nucleotides
HGI48_RS01905 and HGI48_RS01910 are separated by 223 nucleotides
HGI48_RS01910 and HGI48_RS01915 are separated by 119 nucleotides
HGI48_RS01895: HGI48_RS01895 - aspartate carbamoyltransferase regulatory subunit, at 419,886 to 420,350
_RS01895
HGI48_RS01900: HGI48_RS01900 - aspartate carbamoyltransferase, at 420,367 to 421,302
_RS01900
HGI48_RS01905: HGI48_RS01905 - YhcH/YjgK/YiaL family protein, at 421,714 to 422,181
_RS01905
HGI48_RS01910: HGI48_RS01910 - 6-phospho-beta-glucosidase, at 422,405 to 423,841
_RS01910
HGI48_RS01915: HGI48_RS01915 - ornithine carbamoyltransferase, at 423,961 to 424,977
_RS01915
Group
Condition
HGI48
_RS01895
HGI48
_RS01900
HGI48
_RS01905
HGI48
_RS01910
HGI48
_RS01915
carbon source
M9+sucrose
-1.2
-2.0
-0.1
-0.1
-2.6
carbon source
M9+sucrose
-1.2
-1.6
+0.3
-0.0
-2.7
carbon source
M9+sucrose
-0.8
-1.9
-0.1
+0.1
-2.3
carbon source
M9+glycerol
-1.1
-1.6
+0.2
-0.0
-2.4
carbon source
M9+polygalacturonate
-0.4
-1.2
-0.1
-0.0
-3.0
carbon source
M9+polygalacturonate
-0.7
-1.6
+0.1
-0.1
-2.5
carbon source
M9+glycerol
-1.3
-2.1
+0.3
+0.1
-1.5
carbon source
M9+polygalacturonate
+0.4
-1.4
-0.1
+0.0
-2.4
carbon source
M9+glycerol
+0.1
-2.1
+0.1
-0.0
-1.5
carbon source
M9+glycerol
+0.4
-2.1
-0.1
+0.2
-1.6
carbon source
M9+glycerol
-0.1
-1.8
+0.1
+0.2
-1.4
carbon source
M9+glycerol
+0.2
-1.9
+0.2
-0.1
-1.4
plant
Atlantic
-0.7
-1.5
+0.1
-0.3
-0.3
plant
Atlantic
-0.4
-1.6
-0.1
+0.0
-0.2
plant
Atlantic
-0.5
-1.1
-0.0
-0.1
-0.3
plant
Norland
-0.2
-1.3
-0.2
+0.1
-0.2
plant
Norland
-0.2
-1.6
-0.0
+0.0
-0.1
plant
Norland
+0.2
-1.9
+0.2
+0.1
-0.1
plant
Upstate
+0.2
-1.5
-0.4
+0.2
-0.0
plant
Atlantic
+0.1
-1.3
+0.1
-0.3
-0.1
plant
Norland
+0.1
-1.6
+0.2
+0.1
-0.2
plant
Norland
+0.0
-1.3
+0.1
+0.1
-0.2
plant
Upstate
+0.1
-1.4
+0.2
+0.2
-0.2
plant
Atlantic
-0.0
-1.2
-0.2
+0.2
+0.2
plant
Upstate
+0.2
-1.4
+0.1
+0.0
-0.1
control
PDB
-1.0
-0.2
+0.2
+0.0
+0.4
plant
Norland
+0.4
-1.1
+0.2
-0.1
-0.1
plant
Atlantic
-0.2
-0.6
+0.4
+0.3
-0.4
plant
Upstate
+0.0
-1.3
+0.2
+0.4
+0.3
control
PDB
-0.4
-0.3
+0.2
+0.1
+0.3
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