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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS01835 and HGI48_RS01840 are separated by 10 nucleotides
HGI48_RS01840 and HGI48_RS01845 are separated by 27 nucleotides
HGI48_RS01845 and HGI48_RS01850 overlap by 8 nucleotides
HGI48_RS01850 and HGI48_RS01855 are separated by 92 nucleotides
HGI48_RS01835: HGI48_RS01835 - ABC transporter substrate-binding protein, at 407,686 to 409,227
_RS01835
HGI48_RS01840: HGI48_RS01840 - ABC transporter permease, at 409,238 to 410,260
_RS01840
HGI48_RS01845: HGI48_RS01845 - ABC transporter permease, at 410,288 to 411,109
_RS01845
HGI48_RS01850: HGI48_RS01850 - ABC transporter ATP-binding protein, at 411,102 to 412,697
_RS01850
HGI48_RS01855: HGI48_RS01855 - proteasome-type protease, at 412,790 to 413,539
_RS01855
Group
Condition
HGI48
_RS01835
HGI48
_RS01840
HGI48
_RS01845
HGI48
_RS01850
HGI48
_RS01855
plant
Atlantic
-0.1
+0.2
-2.3
-0.5
-0.3
carbon source
M9+glycerol
+0.0
-0.3
-1.3
+0.2
-0.5
carbon source
M9+polygalacturonate
+0.1
-0.1
-1.2
-0.1
-0.2
plant
Atlantic
-0.3
+0.3
-1.0
-0.1
-0.1
control
PDB
-0.2
+0.1
-0.6
+0.1
-0.3
carbon source
M9+glycerol
-0.1
-0.1
-0.2
-0.1
-0.4
control
LB
-0.1
+0.2
-0.8
+0.2
-0.4
carbon source
M9+glycerol
+0.1
+0.2
-1.0
+0.3
-0.3
carbon source
M9+sucrose
+0.1
-0.1
-0.4
-0.4
+0.1
plant
Norland
-0.1
-0.2
-0.1
-0.2
+0.1
plant
Atlantic
+0.0
+0.2
-0.4
+0.1
-0.6
plant
Atlantic
-0.2
+0.3
-1.2
+0.3
+0.3
plant
Norland
+0.1
-0.3
+0.1
-0.3
-0.0
carbon source
M9+polygalacturonate
+0.0
-0.2
-0.3
-0.0
+0.0
control
LB
+0.2
-0.0
-0.0
-0.0
-0.4
carbon source
M9+sucrose
-0.2
-0.2
+0.2
-0.2
+0.1
plant
Norland
-0.1
+0.3
-0.0
-0.2
+0.1
plant
Upstate
-0.1
+0.3
+0.1
-0.2
-0.0
plant
Atlantic
-0.2
+0.2
+0.1
+0.1
-0.0
plant
Norland
+0.1
-0.0
+0.2
+0.2
-0.2
plant
Norland
+0.0
+0.3
-0.3
+0.0
+0.2
control
PDB
+0.1
+0.4
-0.2
+0.1
-0.1
plant
Upstate
+0.3
+0.0
+0.5
-0.3
-0.1
carbon source
M9+sucrose
-0.1
-0.0
+0.4
+0.1
-0.0
carbon source
M9+glycerol
-0.1
+0.3
+0.5
-0.1
-0.3
carbon source
M9+glycerol
+0.0
+0.1
+0.4
+0.2
-0.3
plant
Upstate
+0.1
-0.0
+0.2
+0.2
+0.1
carbon source
M9+polygalacturonate
-0.3
+0.5
+0.2
+0.0
+0.1
plant
Norland
+0.1
+0.2
+0.1
+0.1
+0.3
control
PDB
+0.0
+0.2
+0.6
+0.1
+0.0
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