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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS01715 and HGI48_RS01720 are separated by 4 nucleotides
HGI48_RS01720 and HGI48_RS01725 are separated by 314 nucleotides
HGI48_RS01725 and HGI48_RS01730 are separated by 25 nucleotides
HGI48_RS01730 and HGI48_RS01735 are separated by 150 nucleotides
HGI48_RS01715: HGI48_RS01715 - tol-pal system-associated acyl-CoA thioesterase, at 379,321 to 380,253
_RS01715
HGI48_RS01720: HGI48_RS01720 - TonB system transport protein ExbD, at 380,258 to 380,677
_RS01720
HGI48_RS01725: HGI48_RS01725 - L-rhamnose mutarotase, at 380,992 to 381,306
_RS01725
HGI48_RS01730: HGI48_RS01730 - L-rhamnose/proton symporter RhaT, at 381,332 to 382,360
_RS01730
HGI48_RS01735: HGI48_RS01735 - L-rhamnose isomerase, at 382,511 to 383,770
_RS01735
Group
Condition
HGI48
_RS01715
HGI48
_RS01720
HGI48
_RS01725
HGI48
_RS01730
HGI48
_RS01735
plant
Atlantic
-0.4
-3.0
-0.5
-0.2
+0.1
plant
Atlantic
-1.1
-0.1
-0.4
-0.0
-0.1
plant
Norland
-0.6
-0.8
-0.2
-0.2
+0.1
plant
Atlantic
-1.1
-0.4
-0.2
-0.0
+0.1
plant
Upstate
-1.3
-0.3
-0.1
+0.1
+0.0
plant
Upstate
-0.6
-0.7
+0.1
-0.3
-0.0
plant
Upstate
-0.4
-1.1
-0.0
-0.2
+0.2
plant
Norland
-0.9
-0.6
+0.1
-0.1
+0.1
plant
Norland
-0.9
-0.4
-0.0
-0.0
+0.1
plant
Norland
-0.8
-0.6
-0.0
+0.1
-0.0
carbon source
M9+sucrose
-0.7
-0.7
-0.1
+0.3
-0.1
plant
Atlantic
-0.8
-0.2
-0.0
-0.1
-0.1
plant
Upstate
-0.9
-0.1
-0.1
-0.2
+0.1
carbon source
M9+glycerol
-0.8
-0.6
+0.2
-0.0
+0.2
plant
Upstate
-0.8
-0.6
+0.1
+0.2
-0.0
plant
Norland
-0.4
-0.3
+0.0
-0.2
-0.0
carbon source
M9+glycerol
-0.4
-0.4
-0.2
-0.1
+0.2
control
PDB
-0.5
-0.6
-0.0
+0.1
+0.1
plant
Atlantic
-1.0
+0.1
-0.2
+0.5
-0.0
carbon source
M9+glycerol
-0.8
+0.5
-0.0
+0.0
+0.1
plant
Atlantic
-0.8
+0.3
+0.1
+0.0
+0.4
carbon source
M9+sucrose
-0.2
+0.6
-0.3
-0.1
-0.0
control
PDB
-0.4
+0.7
-0.1
-0.2
+0.2
carbon source
M9+glycerol
-0.5
+0.8
+0.0
-0.1
+0.0
carbon source
M9+glycerol
-0.7
+1.2
-0.1
-0.2
+0.2
plant
Norland
-0.7
+1.4
-0.1
+0.3
+0.1
carbon source
M9+glycerol
-0.9
+1.4
-0.1
+0.3
+0.3
carbon source
M9+polygalacturonate
+0.4
+1.3
-0.2
-0.0
+0.3
carbon source
M9+polygalacturonate
+0.4
+1.6
-0.0
-0.1
+0.1
carbon source
M9+polygalacturonate
+0.7
+1.7
+0.2
+0.3
+0.4
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