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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS01605 and HGI48_RS01610 are separated by 59 nucleotides
HGI48_RS01610 and HGI48_RS01620 are separated by 599 nucleotides
HGI48_RS01620 and HGI48_RS01625 are separated by 170 nucleotides
HGI48_RS01625 and HGI48_RS01630 are separated by 11 nucleotides
HGI48_RS01605: HGI48_RS01605 - penicillin-binding protein activator, at 353,723 to 355,756
_RS01605
HGI48_RS01610: HGI48_RS01610 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 355,816 to 356,685
_RS01610
HGI48_RS01620: HGI48_RS01620 - 4,5-DOPA dioxygenase extradiol, at 357,285 to 358,073
_RS01620
HGI48_RS01625: HGI48_RS01625 - glutathionylspermidine synthase family protein, at 358,244 to 359,404
_RS01625
HGI48_RS01630: HGI48_RS01630 - DUF1190 family protein, at 359,416 to 360,168
_RS01630
Group
Condition
HGI48
_RS01605
HGI48
_RS01610
HGI48
_RS01620
HGI48
_RS01625
HGI48
_RS01630
carbon source
M9+sucrose
-0.2
-0.6
-0.0
-0.0
+0.2
carbon source
M9+sucrose
-0.4
-0.6
+0.4
+0.1
-0.1
plant
Upstate
-0.1
-0.2
+0.0
-0.2
-0.0
plant
Upstate
-0.1
+0.1
-0.3
+0.1
-0.3
plant
Atlantic
-0.4
+0.0
-0.1
-0.1
+0.1
carbon source
M9+polygalacturonate
-0.1
+0.2
-0.4
+0.0
-0.2
carbon source
M9+glycerol
+0.2
+0.1
-0.0
-0.2
-0.2
control
LB
+0.0
-0.2
+0.1
-0.2
+0.2
plant
Norland
+0.1
+0.3
-0.4
-0.0
-0.2
carbon source
M9+sucrose
-0.0
-0.5
-0.1
+0.4
+0.1
carbon source
M9+glycerol
+0.6
-0.0
-0.3
-0.3
+0.1
control
PDB
+0.2
-0.1
-0.2
-0.0
+0.2
carbon source
M9+polygalacturonate
+0.2
+0.4
-0.5
+0.0
+0.0
plant
Atlantic
+0.2
+0.1
-0.3
+0.3
-0.2
plant
Upstate
-0.2
+0.0
+0.1
-0.1
+0.3
plant
Atlantic
-0.1
-0.2
+0.1
+0.2
+0.2
plant
Norland
-0.0
+0.0
-0.2
+0.2
+0.3
plant
Atlantic
-0.1
+0.2
+0.3
+0.2
-0.3
control
PDB
+0.2
-0.0
-0.1
-0.0
+0.2
plant
Upstate
+0.0
-0.0
+0.3
-0.1
+0.1
plant
Upstate
+0.2
-0.1
+0.1
-0.0
+0.3
control
PDB
+0.2
-0.2
-0.0
+0.1
+0.3
carbon source
M9+glycerol
+0.5
-0.0
-0.1
-0.2
+0.4
control
PDB
+0.3
+0.1
-0.2
+0.0
+0.4
control
PDB
-0.1
+0.0
+0.2
+0.1
+0.5
carbon source
M9+polygalacturonate
-0.1
+0.5
+0.3
+0.1
-0.1
plant
Atlantic
+0.2
+0.3
+0.2
+0.1
-0.0
carbon source
M9+glycerol
+0.9
+0.3
-0.3
+0.2
-0.1
carbon source
M9+glycerol
+0.7
+0.2
-0.0
+0.1
+0.1
carbon source
M9+glycerol
+0.9
+0.3
-0.1
-0.0
+0.2
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