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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS01590 and HGI48_RS01595 are separated by 10 nucleotides
HGI48_RS01595 and HGI48_RS01600 are separated by 37 nucleotides
HGI48_RS01600 and HGI48_RS01605 overlap by 4 nucleotides
HGI48_RS01605 and HGI48_RS01610 are separated by 59 nucleotides
HGI48_RS01590: HGI48_RS01590 - divisome-associated lipoprotein YraP, at 352,156 to 352,731
_RS01590
HGI48_RS01595: HGI48_RS01595 - DnaA initiator-associating protein DiaA, at 352,742 to 353,332
_RS01595
HGI48_RS01600: HGI48_RS01600 - YraN family protein, at 353,370 to 353,726
_RS01600
HGI48_RS01605: HGI48_RS01605 - penicillin-binding protein activator, at 353,723 to 355,756
_RS01605
HGI48_RS01610: HGI48_RS01610 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 355,816 to 356,685
_RS01610
Group
Condition
HGI48
_RS01590
HGI48
_RS01595
HGI48
_RS01600
HGI48
_RS01605
HGI48
_RS01610
plant
Atlantic
-3.3
+0.1
-0.0
+0.2
+0.1
plant
Upstate
-1.1
+0.2
-0.6
-0.2
+0.0
control
LB
-0.9
+0.1
-0.3
+0.0
-0.2
carbon source
M9+sucrose
-1.1
+1.1
-0.6
-0.0
-0.5
plant
Upstate
-0.6
+0.4
-0.5
-0.1
-0.2
plant
Norland
-1.3
+0.5
-0.6
+0.1
+0.3
plant
Norland
-0.7
+0.5
-0.4
-0.0
-0.1
plant
Upstate
-1.2
+0.3
+0.3
+0.0
-0.0
carbon source
M9+sucrose
-0.7
+1.1
+0.2
-0.2
-0.6
plant
Norland
-1.2
+0.4
+0.3
+0.2
+0.0
control
PDB
-1.3
+1.0
+0.0
+0.2
-0.1
plant
Atlantic
-1.6
+0.7
+0.7
+0.1
+0.1
plant
Upstate
-0.6
+0.6
+0.4
-0.1
+0.1
carbon source
M9+sucrose
+0.4
+1.2
+0.1
-0.4
-0.6
control
PDB
+0.1
+0.9
-0.3
+0.2
-0.0
plant
Atlantic
+0.3
+0.9
+0.2
-0.1
-0.2
carbon source
M9+glycerol
+0.6
+0.1
-0.4
+0.7
+0.2
control
PDB
-0.2
+1.3
+0.1
+0.2
-0.0
control
PDB
+0.2
+1.3
-0.1
+0.2
-0.2
plant
Atlantic
-0.3
+0.7
+0.7
+0.2
+0.3
control
PDB
+0.2
+1.4
-0.4
+0.3
+0.1
carbon source
M9+polygalacturonate
+0.7
+0.8
+0.0
-0.1
+0.2
carbon source
M9+polygalacturonate
+0.2
+1.3
-0.2
+0.2
+0.4
control
PDB
+0.5
+1.4
-0.1
-0.1
+0.0
carbon source
M9+glycerol
+1.3
+1.0
-0.3
+0.2
+0.1
carbon source
M9+polygalacturonate
+0.8
+1.2
+0.2
-0.1
+0.5
carbon source
M9+glycerol
+3.4
+0.4
-0.5
+0.5
-0.0
carbon source
M9+glycerol
+1.9
+0.9
+0.0
+0.9
+0.3
carbon source
M9+glycerol
+3.3
+0.3
+0.0
+0.9
+0.3
carbon source
M9+glycerol
+5.3
+0.7
-0.7
+0.6
-0.0
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