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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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500 nt
HGI48_RS01495 and HGI48_RS01500 overlap by 8 nucleotides
HGI48_RS01500 and HGI48_RS01505 are separated by 133 nucleotides
HGI48_RS01505 and HGI48_RS01510 are separated by 53 nucleotides
HGI48_RS01510 and HGI48_RS01515 are separated by 54 nucleotides
HGI48_RS01495: HGI48_RS01495 - phospholipid-binding protein MlaC, at 329,121 to 329,774
_RS01495
HGI48_RS01500: HGI48_RS01500 - lipid asymmetry maintenance protein MlaB, at 329,767 to 330,069
_RS01500
HGI48_RS01505: HGI48_RS01505 - BolA family iron metabolism protein IbaG, at 330,203 to 330,457
_RS01505
HGI48_RS01510: HGI48_RS01510 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 330,511 to 331,773
_RS01510
HGI48_RS01515: HGI48_RS01515 - outer membrane-stress sensor serine endopeptidase DegS, at 331,828 to 332,889
_RS01515
Group
Condition
HGI48
_RS01495
HGI48
_RS01500
HGI48
_RS01505
HGI48
_RS01510
HGI48
_RS01515
control
PDB
+0.2
-1.2
+0.1
N.D.
-1.2
carbon source
M9+sucrose
+0.2
-0.2
-1.4
N.D.
-0.7
carbon source
M9+polygalacturonate
-0.1
-0.2
-1.7
N.D.
-0.1
carbon source
M9+polygalacturonate
-0.2
+0.1
-1.6
N.D.
-0.1
plant
Atlantic
-0.6
-0.7
-0.6
N.D.
+0.3
control
LB
-0.6
-0.4
-0.3
N.D.
-0.2
plant
Atlantic
-0.8
-0.2
-0.4
N.D.
+0.1
carbon source
M9+glycerol
-0.5
-0.2
-1.0
N.D.
+0.4
carbon source
M9+glycerol
-0.1
-0.4
-1.3
N.D.
+0.5
plant
Atlantic
-0.2
-0.1
-1.1
N.D.
+0.1
carbon source
M9+glycerol
-0.4
+0.2
-1.3
N.D.
+0.2
plant
Atlantic
-0.4
+0.1
-0.9
N.D.
-0.1
carbon source
M9+polygalacturonate
+0.2
-0.4
-1.4
N.D.
+0.5
carbon source
M9+glycerol
+0.0
-0.8
-0.7
N.D.
+0.2
control
PDB
+0.2
-1.2
+0.6
N.D.
-0.8
carbon source
M9+glycerol
+0.3
+0.1
-0.9
N.D.
-0.5
carbon source
M9+sucrose
+0.4
-0.2
-0.6
N.D.
-0.6
plant
Atlantic
-0.5
-0.5
-0.2
N.D.
+0.3
plant
Norland
-0.4
-0.2
-0.6
N.D.
+0.3
plant
Atlantic
-0.0
+0.1
-0.7
N.D.
-0.1
carbon source
M9+sucrose
+0.5
+0.6
-1.2
N.D.
-0.7
control
LB
-0.5
+0.1
-0.3
N.D.
-0.1
control
PDB
+0.2
-0.5
+0.8
N.D.
-0.9
control
PDB
+0.0
-0.1
+0.5
N.D.
-0.8
plant
Upstate
-0.5
-0.1
+0.1
N.D.
+0.2
carbon source
M9+glycerol
+0.3
+0.3
-1.1
N.D.
+0.3
plant
Norland
-0.1
-0.1
-0.4
N.D.
+0.3
control
PDB
+0.5
-0.4
+0.4
N.D.
-0.7
plant
Norland
+0.2
-0.1
-0.4
N.D.
+0.2
control
PDB
+0.5
-0.3
+0.6
N.D.
-0.9
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