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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS01390 and HGI48_RS01395 are separated by 31 nucleotides
HGI48_RS01395 and HGI48_RS01400 are separated by 13 nucleotides
HGI48_RS01400 and HGI48_RS01405 are separated by 6 nucleotides
HGI48_RS01405 and HGI48_RS01410 are separated by 293 nucleotides
HGI48_RS01390: HGI48_RS01390 - AaeX family protein, at 311,856 to 312,059
_RS01390
HGI48_RS01395: HGI48_RS01395 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 312,091 to 313,014
_RS01395
HGI48_RS01400: HGI48_RS01400 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 313,028 to 314,977
_RS01400
HGI48_RS01405: HGI48_RS01405 - DUF1543 domain-containing protein, at 314,984 to 315,484
_RS01405
HGI48_RS01410: HGI48_RS01410 - ribosome-associated protein, at 315,778 to 316,326
_RS01410
Group
Condition
HGI48
_RS01390
HGI48
_RS01395
HGI48
_RS01400
HGI48
_RS01405
HGI48
_RS01410
plant
Atlantic
-0.2
+0.3
-0.2
-0.4
-2.3
carbon source
M9+glycerol
+0.0
+0.5
+0.1
-0.5
-2.6
plant
Upstate
-0.0
-0.2
+0.2
-0.5
-1.4
plant
Atlantic
+0.1
+0.2
+0.5
-0.9
-1.6
carbon source
M9+sucrose
+0.1
+0.2
-0.0
+0.1
-1.9
control
LB
+0.1
+0.1
+0.2
-0.4
-1.4
plant
Norland
-0.4
+0.5
-0.2
-0.1
-1.2
plant
Norland
-0.5
+0.0
+0.2
-0.2
-0.7
carbon source
M9+polygalacturonate
+0.0
+0.4
+0.1
+0.3
-1.9
carbon source
M9+sucrose
+0.3
+0.1
+0.0
+0.0
-1.3
plant
Norland
+0.1
+0.3
-0.3
-0.5
-0.4
carbon source
M9+sucrose
+0.3
+0.3
+0.2
-0.6
-0.9
carbon source
M9+glycerol
-0.2
+0.5
+0.1
-0.6
-0.4
plant
Upstate
-0.0
-0.0
+0.2
+0.1
-0.8
plant
Atlantic
-0.0
+0.4
+0.2
+0.2
-1.3
plant
Atlantic
+0.0
+0.1
+0.3
-0.4
-0.5
plant
Norland
-0.3
+0.3
+0.2
-0.0
-0.6
control
PDB
-0.5
-0.2
-0.0
-0.4
+0.5
carbon source
M9+polygalacturonate
-0.0
+0.3
+0.2
-0.2
-0.6
plant
Atlantic
+0.3
+0.7
+0.4
-0.2
-1.4
carbon source
M9+polygalacturonate
-0.2
+0.4
+0.1
-0.2
-0.3
carbon source
M9+glycerol
-0.2
+0.4
+0.1
+0.3
-0.6
control
PDB
-0.3
-0.1
+0.0
-0.1
+0.8
control
PDB
-0.1
+0.0
+0.2
-0.2
+0.6
carbon source
M9+glycerol
-0.3
+0.1
+0.1
+0.1
+0.5
plant
Atlantic
+0.0
+0.3
+0.1
+0.4
-0.3
control
PDB
-0.0
-0.2
+0.1
-0.3
+1.2
control
PDB
+0.3
+0.1
-0.1
+0.0
+0.8
control
PDB
+0.3
+0.0
+0.1
-0.2
+0.9
plant
Upstate
+0.3
-0.2
+0.3
-0.4
+1.8
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